# library(tidyverse)
library(ggplot2)
library(vegan)
library(phyloseq)
library (ape)
library(RColorBrewer)
source("read.newick.R")

otu <- as.matrix(read.table("metro2_wosingletons_otu_table.txt", header=T, row.names=1)) #tabla de OTUs sin singletons, formato tabular.  eliminados con: http://qiime.org/scripts/filter_otus_from_otu_table.html
OTU = otu_table(otu, taxa_are_rows=T)
head(OTU)
taximat = as.matrix(read.table("metro.tax", header=T, row.names=1)) #revisar los encabezados
taxi=tax_table(taximat)
metro = phyloseq(OTU, taxi)
sample_names(metro)
data= read.table("THEmetadata.txt", header=T, row.names=1, sep="\t")#los metadatos deben de estar en el mismo orden en el que estan en la tabla de OTUs:  sample_data(camaron)
sampledata = sample_data(data.frame(id=data$id, sample_location=data$sample_location, sample_id=data$sample_id,line_number=data$line_number, sample_type=data$sample_type, date=data$date, time=data$time, temperature_C=data$temperature_C, Humidity=data$Humidity, length_underground=data$ length_underground, length_superficial=data$length_superficial, length_elevated=data$length_elevated, length_total=data$length_total, elevation=data$elevation, station=data$station_hubs, train_track=data$train_track, train_notes=data$train_notes, station_notes=data$station_notes, geographical_zone=data$geographical_zone, weather=data$weather, stations_number=data$stations_number, latitude=data$latitude, longitude=data$longitude, people_affluence=data$people_affluence, Observed=data$Observed, Chao1=data$Chao1, Shannon=data$Shannon, Simpson=data$Simpson, row.names=sample_names(metro)))
tree <- read.newick("metro.tre")
tree <- collapse.singles(tree)
metro = phyloseq (OTU, sampledata, taxi, phy_tree(tree))

metro
Loading required package: permute
Loading required package: lattice
This is vegan 2.5-4
<th scope=col>AM03</th><th scope=col>AM23</th><th scope=col>AM17</th><th scope=col>AM01</th><th scope=col>AM02</th><th scope=col>AM06</th><th scope=col>AM07</th><th scope=col>AM08</th><th scope=col>AM09</th><th scope=col>AM10</th><th scope=col>⋯</th><th scope=col>AM47</th><th scope=col>AM04</th><th scope=col>AM13</th><th scope=col>AM35</th><th scope=col>AM36</th><th scope=col>AM40</th><th scope=col>AM43</th><th scope=col>AM44</th><th scope=col>AM48</th><th scope=col>AM05</th><th scope=row>0</th><th scope=row>2</th><th scope=row>4</th><th scope=row>9</th><th scope=row>13</th><th scope=row>16</th>
365114 192 211600 507 287 220190 467 69208 131145 182 181 75 83 219 0
57 76 76 396222 78 509 33260 605 28858 511 44 249 166 30 22 105 0
0 0 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
2 4 2 2 3 0 0 0 2 0 3 0 0 1 0 0 0 0 0 0
12 9 22 21 12 2 3 28 2 21 6 3 13 14 2 16 2 1 1 0
1358350 18002249930 854 712 1492453 67941863274 3947625 579 483 1080421 679 9

<ol class=list-inline> <li>‘AM03’</li> <li>‘AM23’</li> <li>‘AM17’</li> <li>‘AM01’</li> <li>‘AM02’</li> <li>‘AM06’</li> <li>‘AM07’</li> <li>‘AM08’</li> <li>‘AM09’</li> <li>‘AM10’</li> <li>‘AM11’</li> <li>‘AM12’</li> <li>‘AM14’</li> <li>‘AM15’</li> <li>‘AM16’</li> <li>‘AM18’</li> <li>‘AM19’</li> <li>‘AM20’</li> <li>‘AM21’</li> <li>‘AM22’</li> <li>‘AM24’</li> <li>‘AM26’</li> <li>‘AM27’</li> <li>‘AM28’</li> <li>‘AM29’</li> <li>‘AM30’</li> <li>‘AM31’</li> <li>‘AM32’</li> <li>‘AM33’</li> <li>‘AM34’</li> <li>‘AM37’</li> <li>‘AM38’</li> <li>‘AM39’</li> <li>‘AM41’</li> <li>‘AM42’</li> <li>‘AM45’</li> <li>‘AM46’</li> <li>‘AM47’</li> <li>‘AM04’</li> <li>‘AM13’</li> <li>‘AM35’</li> <li>‘AM36’</li> <li>‘AM40’</li> <li>‘AM43’</li> <li>‘AM44’</li> <li>‘AM48’</li> <li>‘AM05’</li> </ol>

phyloseq-class experiment-level object
otu_table()   OTU Table:         [ 50174 taxa and 47 samples ]
sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
tax_table()   Taxonomy Table:    [ 50174 taxa by 7 taxonomic ranks ]
phy_tree()    Phylogenetic Tree: [ 50174 tips and 50172 internal nodes ]
head(tax_table(metro))
<th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=col>Species</th><th scope=row>478530</th><th scope=row>471453</th><th scope=row>477065</th><th scope=row>438378</th><th scope=row>438943</th><th scope=row>450910</th>
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetalesf__Micrococcaceae g__Kocuria s__
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetalesf__ g__ s__
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetalesf__ g__ s__
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetalesf__ g__ s__
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetalesf__Dermacoccaceae g__Dermacoccus s__
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetalesf__ g__ s__
p <- plot_richness(metro, x="sample_type", color="line_number", measures=c("Observed", "Chao1", "Shannon", "Simpson")) + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
#p$data
a <-p$data
summary(a)
p

p <- plot_richness(metro, x="sample_type", measures=c("Observed", "Chao1", "Shannon", "Simpson")) + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
#p$data
p
ggsave("histogramaOTUs_alfa_diversidad.pdf")

p <- plot_richness(metro, x="line_number", color="stations_number", measures=c("Observed", "Chao1", "Shannon", "Simpson")) + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
#p$data
p

p <- plot_richness(metro, x="station",color="people_affluence", measures=c("Observed", "Chao1", "Shannon", "Simpson")) + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
#p$data
p

p <- plot_richness(metro, x="train_track",color="people_affluence", measures=c("Observed", "Chao1", "Shannon", "Simpson")) + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
#p$data
p


p <- plot_richness(metro, x="train_notes",color="people_affluence", measures=c("Observed", "Chao1", "Shannon", "Simpson")) + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
#p$data
p

p <- plot_richness(metro, x="station_notes",color="people_affluence", measures=c("Observed", "Chao1", "Shannon", "Simpson")) + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
#p$data
# p

p <- plot_richness(metro, x="sample_type",color="Shannon.1", measures= "Shannon") + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
a<- p$data
p
write.csv(a,"shannon.estacion.csv",sep="\t")

                      id                  sample_location   sample_id  
 Barranca_del_muerto_7 :  4   Train               :92     AM01   :  4  
 Buenavista_B          :  4   Barranca_del_muerto : 4     AM02   :  4  
 Chilpancingo_9        :  4   Buenavista          : 4     AM03   :  4  
 Ciudad_Azteca_B       :  4   Chilpancingo        : 4     AM04   :  4  
 Constitucion_de_1917_8:  4   Ciudad_Azteca       : 4     AM05   :  4  
 Cuatro_caminos_2      :  4   Constitucion_de_1917: 4     AM06   :  4  
 (Other)               :164   (Other)             :76     (Other):164  
  line_number     sample_type         date             time     temperature_C  
 2      :24   Pasamanos :92   02/05/16  :36   01:20:00 PM:  8   Min.   :25.90  
 11(B)  :20   Torniquete:96   03/05/16  :28   01:29:00 PM:  8   1st Qu.:29.10  
 3      :20                   04/05/16  :24   11:25:00 AM:  8   Median :30.40  
 1      :16                   2027-04-16:36   11:42:00 AM:  8   Mean   :30.15  
 10(A)  :16                   2028-04-16:24   12:05:00 PM:  8   3rd Qu.:31.30  
 7      :16                   2029-04-16:40   12:40:00 PM:  8   Max.   :33.30  
 (Other):76                                   (Other)    :140                  
    Humidity     length_underground length_superficial length_elevated 
 Min.   :25.00   Min.   : 0.00      Min.   : 0.000     Min.   : 0.000  
 1st Qu.:27.00   1st Qu.: 5.38      1st Qu.: 0.000     1st Qu.: 0.000  
 Median :30.00   Median :11.86      Median : 4.449     Median : 0.000  
 Mean   :30.38   Mean   :11.05      Mean   : 5.485     Mean   : 2.001  
 3rd Qu.:32.00   3rd Qu.:16.79      3rd Qu.:10.724     3rd Qu.: 4.185  
 Max.   :41.00   Max.   :18.14      Max.   :15.151     Max.   :11.533  
                                                                       
  length_total     elevation                        station      train_track 
 Min.   :11.00   Min.   :2231   Correspondecia          :12   Ferreo   : 28  
 1st Qu.:16.00   1st Qu.:2237   Paso                    :24   Neumatico:160  
 Median :18.00   Median :2242   Terminal                :44                  
 Mean   :18.83   Mean   :2250   Terminal_correspondencia:16                  
 3rd Qu.:22.00   3rd Qu.:2256   Train                   :92                  
 Max.   :25.00   Max.   :2303                                                
                 NA's   :92                                                  
        train_notes            station_notes geographical_zone weather  
 Independiente:136   Cajon_subterraneo:44    Centro  :20       B1  :16  
 Oruga        : 52   Elevada          :36    Norte   :28       C1  :64  
                     Superficial      :12    Oriente :20       C2  :16  
                     Tunel            : 4    Poniente:12       NA's:92  
                     NA's             :92    Sur     :16                
                                             NA's    :92                
                                                                        
 stations_number    latitude       longitude      people_affluence  
 Min.   :10.00   Min.   :19.29   Min.   :-99.22   Min.   :  499350  
 1st Qu.:12.00   1st Qu.:19.39   1st Qu.:-99.17   1st Qu.: 4190568  
 Median :19.00   Median :19.43   Median :-99.14   Median : 9523016  
 Mean   :17.15   Mean   :19.43   Mean   :-99.13   Mean   :17859153  
 3rd Qu.:21.00   3rd Qu.:19.49   3rd Qu.:-99.10   3rd Qu.:24196452  
 Max.   :24.00   Max.   :19.53   Max.   :-98.96   Max.   :66232325  
                 NA's   :92      NA's   :92                         
   Observed.1       Chao1.1          Shannon.1       Simpson.1     
 Min.   :  428   Min.   :  840.2   Min.   :4.102   Min.   :0.8984  
 1st Qu.: 7655   1st Qu.:12618.1   1st Qu.:6.004   1st Qu.:0.9802  
 Median :10129   Median :15375.8   Median :6.410   Median :0.9872  
 Mean   : 9904   Mean   :15141.1   Mean   :6.380   Mean   :0.9827  
 3rd Qu.:12677   3rd Qu.:18521.1   3rd Qu.:6.863   3rd Qu.:0.9916  
 Max.   :16179   Max.   :23052.1   Max.   :7.384   Max.   :0.9960  
                                                                   
   samples              variable      value                 se       
 Length:188         Observed:47   Min.   :    0.898   Min.   : 77.0  
 Class :character   Chao1   :47   1st Qu.:    3.325   1st Qu.:196.0  
 Mode  :character   Shannon :47   Median :  217.692   Median :208.1  
                    Simpson :47   Mean   : 6262.670   Mean   :208.7  
                                  3rd Qu.:12626.089   3rd Qu.:235.3  
                                  Max.   :23055.044   Max.   :279.1  
                                                      NA's   :141    


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Warning message:
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Warning message:
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Warning message:
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Warning message:
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Warning message in write.csv(a, "shannon.estacion.csv", sep = "\t"):
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library(ggrepel)
p <- plot_richness(metro, x="sample_type",color="Shannon.1", measures= "Shannon") 
p +  geom_point(size=5, alpha=1) +   scale_fill_gradient(low="#F1E8FA", high="#FA7500", na.value = "white") + theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))


a<-as.data.frame(p$data)

head(a)
# head(p$data$id)
# head(a)
shannonplot <- ggplot(a, aes(x=a$sample_type, y=(a$Shannon.1))) + geom_point(aes(colour=a$Shannon.1), size=5) + scale_colour_gradient(low="#bebebe", high="#000000", na.value = "white")+ theme_light() + 
# geom_text(aes(label=a$id), hjust=-0.1, vjust=0, size=2) + 
xlab("") + ylab("Shannon")

shannonplot + geom_label_repel(aes(label = a$id),
                  box.padding   = 0.35, 
                  point.padding = 0.5,
                  segment.color = 'blue', size=2)


# ggplot(data=yx, aes(x = yx$orden, y= reorder(Genus, Abundance), fill= Abundance))  + 
#    geom_raster() + theme_minimal () +
#    xlab("") + ylab("") +
#    scale_fill_gradient(low="#bebebe", high="#000000", na.value = "white", trans = "log10") +
#    theme(axis.text.x = element_text( angle = 90, hjust = 1),
#          axis.text.y = element_text(size = 4))
# write.csv(a,"shannon.estacion.csv",sep="\t")



# library(ggplot2)
# library(ggrepel)

# nba <- read.csv("http://datasets.flowingdata.com/ppg2008.csv", sep = ",")

# nbaplot <- ggplot(nba, aes(x= MIN, y = PTS)) + 
#   geom_point(color = "blue", size = 3)

# ### geom_label_repel
# nbaplot + 
#   geom_label_repel(aes(label = Name),
#                   box.padding   = 0.35, 
#                   point.padding = 0.5,
#                   segment.color = 'grey50') +
#   theme_classic()


<th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>temperature_C</th><th scope=col>Humidity</th><th scope=col>length_underground</th><th scope=col>⋯</th><th scope=col>longitude</th><th scope=col>people_affluence</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon.1</th><th scope=col>Simpson</th><th scope=col>samples</th><th scope=col>variable</th><th scope=col>value</th><th scope=col>se</th>
Rosario_7 Rosario AM03 7 Torniquete 2029-04-16 12:40:00 PM 29.2 29 17.754 -99.17970 3220719 11986 18521.13 6.718174 0.9892510 AM03 Shannon 6.718174 NA
Merced_1 Merced AM23 1 Torniquete 2029-04-16 02:30:00 PM 31.4 30 16.786 -99.12501 4377638 10129 14588.96 6.023258 0.9370759 AM23 Shannon 6.023109 NA
Deportivo_18_de_marzo_3 Deportivo_18_de_marzo AM17 3 Torniquete 02/05/16 02:07:00 PM 30.7 26 18.145 -99.12493 3152077 16179 22648.83 7.147670 0.9914642 AM17 Shannon 7.147596 NA
Indios_verdes_3 Indios_verdes AM01 3 Torniquete 02/05/16 02:23:00 PM 30.4 27 18.145 -99.11940 10176457 12677 19699.22 7.160039 0.9921556 AM01 Shannon 7.159977 NA
Instituto_del_petroleo_5Instituto_del_petroleo AM02 5 Torniquete 2029-04-16 01:17:00 PM 28.3 30 4.951 -99.14480 499350 10722 16496.38 6.417885 0.9890120 AM02 Shannon 6.417885 NA
Observatorio_1 Observatorio AM06 1 Torniquete 04/05/16 02:35:00 PM 32.2 28 16.786 -99.19978 6489055 10523 17035.51 6.437592 0.9859032 AM06 Shannon 6.437374 NA

png

png

library(ggrepel)
p <- plot_richness(metro, x="sample_type",color="Shannon.1", measures= "Shannon") 
p + geom_violin()+ geom_point(aes(colour=a$Shannon.1),size=5, alpha=1) + scale_colour_gradient(low="#bebebe", high="#000000", na.value = "white") + theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))


png

library(dplyr)


p <- plot_richness(metro, measures=c("Observed", "Chao1", "Shannon", "Simpson")) + geom_boxplot()+theme_light() + theme(axis.text.x=element_text(angle=90, hjust=1))
#p$data
#a <-p$data
#summary(a)
#write.table(a, "data.csv") Se edita para dejar en el formato id	Observed	Chao1	Shannon	Simpson
meta <- read.table("metadata.txt",sep="\t",header=T,row.names = 1) #data.csv se hizo a partir de la tabla anterior para calcular
#los datos de diversidad alfa
head(meta)
summary(meta)

hist(meta$Observed, breaks=10)
hist(meta$Chao1, breaks=10)
hist(meta$Shannon, breaks=10)
hist(meta$Simpson, breaks=10)


<th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>temperature_C</th><th scope=col>Humidity</th><th scope=col>length_underground</th><th scope=col>⋯</th><th scope=col>geographical_zone</th><th scope=col>weather</th><th scope=col>stations_number</th><th scope=col>latitude</th><th scope=col>longitude</th><th scope=col>people_affluence</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=row>Rosario_7</th><th scope=row>Merced_1</th><th scope=row>Deportivo_18_de_marzo_3</th><th scope=row>Indios_verdes_3</th><th scope=row>Instituto_del_petroleo_5</th><th scope=row>Observatorio_1</th>
Rosario_7 Rosario AM03 7 Torniquete 2029-04-16 12:40:00 PM 29.2 29 17.754 Norte C1 14 19.50500 -99.17970 3220719 11986 18521.13 6.718174 0.9892510
Merced_1 Merced AM23 1 Torniquete 2029-04-16 02:30:00 PM 31.4 30 16.786 Centro B1 20 19.42579 -99.12501 4377638 10129 14588.96 6.023258 0.9370759
Deportivo_18_de_marzo_3 Deportivo_18_de_marzo AM17 3 Torniquete 02/05/16 02:07:00 PM 30.7 26 18.145 Norte C1 21 19.48635 -99.12493 3152077 16179 22648.83 7.147670 0.9914642
Indios_verdes_3 Indios_verdes AM01 3 Torniquete 02/05/16 02:23:00 PM 30.4 27 18.145 Norte C1 21 19.49550 -99.11940 10176457 12677 19699.22 7.160039 0.9921556
Instituto_del_petroleo_5Instituto_del_petroleo AM02 5 Torniquete 2029-04-16 01:17:00 PM 28.3 30 4.951 Norte C1 13 19.48900 -99.14480 499350 10722 16496.38 6.417885 0.9890120
Observatorio_1 Observatorio AM06 1 Torniquete 04/05/16 02:35:00 PM 32.2 28 16.786 Poniente C2 20 19.39850 -99.19978 6489055 10523 17035.51 6.437592 0.9859032
                      id                 sample_location   sample_id 
 Barranca_del_muerto_7 : 1   Train               :23     AM01   : 1  
 Buenavista_B          : 1   Barranca_del_muerto : 1     AM02   : 1  
 Chilpancingo_9        : 1   Buenavista          : 1     AM03   : 1  
 Ciudad_Azteca_B       : 1   Chilpancingo        : 1     AM04   : 1  
 Constitucion_de_1917_8: 1   Ciudad_Azteca       : 1     AM05   : 1  
 Cuatro_caminos_2      : 1   Constitucion_de_1917: 1     AM06   : 1  
 (Other)               :41   (Other)             :19     (Other):41  
  line_number     sample_type         date             time    temperature_C  
 2      : 6   Pasamanos :23   02/05/16  : 9   01:20:00 PM: 2   Min.   :25.90  
 11(B)  : 5   Torniquete:24   03/05/16  : 7   01:29:00 PM: 2   1st Qu.:29.10  
 3      : 5                   04/05/16  : 6   11:25:00 AM: 2   Median :30.40  
 1      : 4                   2027-04-16: 9   11:42:00 AM: 2   Mean   :30.15  
 10(A)  : 4                   2028-04-16: 6   12:05:00 PM: 2   3rd Qu.:31.30  
 7      : 4                   2029-04-16:10   12:40:00 PM: 2   Max.   :33.30  
 (Other):19                                   (Other)    :35                  
    Humidity     length_underground length_superficial length_elevated 
 Min.   :25.00   Min.   : 0.00      Min.   : 0.000     Min.   : 0.000  
 1st Qu.:27.00   1st Qu.: 5.38      1st Qu.: 0.000     1st Qu.: 0.000  
 Median :30.00   Median :11.86      Median : 4.449     Median : 0.000  
 Mean   :30.38   Mean   :11.05      Mean   : 5.485     Mean   : 2.001  
 3rd Qu.:32.00   3rd Qu.:16.79      3rd Qu.:10.090     3rd Qu.: 4.185  
 Max.   :41.00   Max.   :18.14      Max.   :15.151     Max.   :11.533  
                                                                       
  length_total     elevation                      station_hubs    train_track
 Min.   :11.00   Min.   :2231   Correspondecia          : 3    Ferreo   : 7  
 1st Qu.:16.50   1st Qu.:2237   Paso                    : 6    Neumatico:40  
 Median :18.00   Median :2242   Terminal                :11                  
 Mean   :18.83   Mean   :2250   Terminal_correspondencia: 4                  
 3rd Qu.:22.00   3rd Qu.:2256   Train                   :23                  
 Max.   :25.00   Max.   :2303                                                
                 NA's   :23                                                  
        train_notes           station_notes geographical_zone weather  
 Independiente:34   Cajon_subterraneo:11    Centro  : 5       B1  : 4  
 Oruga        :13   Elevada          : 9    Norte   : 7       C1  :16  
                    Superficial      : 3    Oriente : 5       C2  : 4  
                    Tunel            : 1    Poniente: 3       NA's:23  
                    NA's             :23    Sur     : 4                
                                            NA's    :23                
                                                                       
 stations_number    latitude       longitude      people_affluence  
 Min.   :10.00   Min.   :19.29   Min.   :-99.22   Min.   :  499350  
 1st Qu.:12.00   1st Qu.:19.39   1st Qu.:-99.17   1st Qu.: 4284103  
 Median :19.00   Median :19.43   Median :-99.14   Median : 9523016  
 Mean   :17.15   Mean   :19.43   Mean   :-99.13   Mean   :17859153  
 3rd Qu.:21.00   3rd Qu.:19.49   3rd Qu.:-99.10   3rd Qu.:24196452  
 Max.   :24.00   Max.   :19.53   Max.   :-98.96   Max.   :66232325  
                 NA's   :23      NA's   :23                         
    Observed         Chao1            Shannon         Simpson      
 Min.   :  428   Min.   :  840.2   Min.   :4.102   Min.   :0.8984  
 1st Qu.: 7732   1st Qu.:12826.6   1st Qu.:6.014   1st Qu.:0.9813  
 Median :10129   Median :15375.8   Median :6.410   Median :0.9872  
 Mean   : 9904   Mean   :15141.1   Mean   :6.380   Mean   :0.9827  
 3rd Qu.:12332   3rd Qu.:18371.5   3rd Qu.:6.810   3rd Qu.:0.9915  
 Max.   :16179   Max.   :23052.1   Max.   :7.384   Max.   :0.9960  

png

png

png

png


aov.shannon.year = aov(Shannon~sample_type, data=meta)

summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Observed~sample_type, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Shannon~line_number, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Observed~line_number, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Shannon~station_hubs, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Observed~station_hubs, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Shannon~train_track, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Observed~train_track, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Observed~train_notes, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Shannon~train_notes, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Shannon~station_notes, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

aov.shannon.year = aov(Observed~station_notes, data=meta) summary(aov.shannon.year) TukeyHSD(aov.shannon.year)

library (ape)
source("read.newick.R")

tree <- read.newick("metro.tre")

tree <- collapse.singles(tree)

metro = phyloseq (OTU, sampledata, phy_tree(tree))

metro

phyloseq-class experiment-level object
otu_table()   OTU Table:         [ 50183 taxa and 47 samples ]
sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
phy_tree()    Phylogenetic Tree: [ 50183 tips and 50181 internal nodes ]
metroCAP.ORD <- ordinate(metro, "CAP", "unifrac", ~ line_number + sample_type )

metroCAP.ORD

cap_plot <- plot_ordination(metro, metroCAP.ORD, color="line_number", axes =c(1,2)) + aes(shape= sample_type) + geom_point(aes(colour = line_number), alpha=0.4, size=4) + geom_point(colour = "grey90", size=1.5) + theme_bw()


arrowmat <- vegan::scores(metroCAP.ORD, display="bp")
arrowdf <- data.frame(labels=rownames(arrowmat), arrowmat)



# Define the arrow aesthetic mapping

arrow_map <- aes(xend = CAP1, 

    yend = CAP2, 
    x = 0, 
    y = 0, 
    shape = NULL, 
    color = NULL, 
    label = labels)


label_map <- aes(x = 1.3 * CAP1, 

    y = 1.3 * CAP2, 
    shape = NULL, 
    color = NULL, 
    label = labels)



arrowhead = arrow(length = unit(0.02, "npc"))



cap_plot  + 

  geom_segment(
    mapping = arrow_map, 
    size = .5, 
    data = arrowdf, 
    color = "gray", 
    arrow = arrowhead

  ) + 

  geom_text(
    mapping = label_map, 
    size = 2,  
    data = arrowdf, 
    show.legend = FALSE
  )


an <- anova(metroCAP.ORD, permutations=9999)
an
Warning message in UniFrac(physeq, ...):
“Randomly assigning root as -- 438980 -- in the phylogenetic tree in the data you provided.”


Call: capscale(formula = distance ~ line_number + sample_type, data =
data)

              Inertia Proportion Rank
Total          9.6602     1.0000     
Constrained    2.7430     0.2839   12
Unconstrained  6.9172     0.7161   34
Inertia is squared Unknown distance 

Eigenvalues for constrained axes:
  CAP1   CAP2   CAP3   CAP4   CAP5   CAP6   CAP7   CAP8   CAP9  CAP10  CAP11 
0.5087 0.3865 0.2622 0.2225 0.1909 0.1881 0.1825 0.1765 0.1640 0.1586 0.1526 
 CAP12 
0.1500 

Eigenvalues for unconstrained axes:
  MDS1   MDS2   MDS3   MDS4   MDS5   MDS6   MDS7   MDS8 
0.8688 0.4684 0.2977 0.2585 0.2523 0.2214 0.2103 0.2061 
(Showing 8 of 34 unconstrained eigenvalues)



Warning message:
“Ignoring unknown aesthetics: label”
<th scope=col>Df</th><th scope=col>SumOfSqs</th><th scope=col>F</th><th scope=col>Pr(>F)</th><th scope=row>Model</th><th scope=row>Residual</th>
12 2.7429881.1235480.0169
34 6.917194 NA NA

png

metroCAP.ORD <- ordinate(metro, "CAP", "unifrac", ~ people_affluence + line_number )

metroCAP.ORD

cap_plot <- plot_ordination(metro, metroCAP.ORD, color="line_number", axes =c(1,2)) + aes(shape= sample_type) + geom_point(aes(colour = line_number), alpha=0.4, size=4) + geom_point(colour = "grey90", size=1.5) + theme_bw()


arrowmat <- vegan::scores(metroCAP.ORD, display="bp")
arrowdf <- data.frame(labels=rownames(arrowmat), arrowmat)



# Define the arrow aesthetic mapping

arrow_map <- aes(xend = CAP1, 

    yend = CAP2, 
    x = 0, 
    y = 0, 
    shape = NULL, 
    color = NULL, 
    label = labels)


label_map <- aes(x = 1.3 * CAP1, 

    y = 1.3 * CAP2, 
    shape = NULL, 
    color = NULL, 
    label = labels)



arrowhead = arrow(length = unit(0.02, "npc"))



cap_plot  + 

  geom_segment(
    mapping = arrow_map, 
    size = .5, 
    data = arrowdf, 
    color = "gray", 
    arrow = arrowhead

  ) + 

  geom_text(
    mapping = label_map, 
    size = 2,  
    data = arrowdf, 
    show.legend = FALSE
  )


an <- anova(metroCAP.ORD, permutations=9999)
an
Warning message in UniFrac(physeq, ...):
“Randomly assigning root as -- 86589 -- in the phylogenetic tree in the data you provided.”


Call: capscale(formula = distance ~ people_affluence + line_number,
data = data)

              Inertia Proportion Rank
Total          9.6592     1.0000     
Constrained    2.6884     0.2783   12
Unconstrained  6.9708     0.7217   34
Inertia is squared Unknown distance 

Eigenvalues for constrained axes:
  CAP1   CAP2   CAP3   CAP4   CAP5   CAP6   CAP7   CAP8   CAP9  CAP10  CAP11 
0.4835 0.3577 0.2615 0.2229 0.1896 0.1878 0.1826 0.1761 0.1653 0.1589 0.1525 
 CAP12 
0.1498 

Eigenvalues for unconstrained axes:
  MDS1   MDS2   MDS3   MDS4   MDS5   MDS6   MDS7   MDS8 
0.8664 0.4659 0.3386 0.2689 0.2465 0.2218 0.2115 0.2088 
(Showing 8 of 34 unconstrained eigenvalues)



Warning message:
“Ignoring unknown aesthetics: label”
<th scope=col>Df</th><th scope=col>SumOfSqs</th><th scope=col>F</th><th scope=col>Pr(>F)</th><th scope=row>Model</th><th scope=row>Residual</th>
12 2.6883851.0927070.0471
34 6.970847 NA NA

png

metroCAP.ORD <- ordinate(metro, "CAP", "unifrac", ~ people_affluence + line_number + sample_type)

metroCAP.ORD

cap_plot <- plot_ordination(metro, metroCAP.ORD, color="line_number", axes =c(1,2)) + aes(shape= sample_type) + geom_point(aes(colour = line_number), alpha=0.4, size=4) + geom_point(colour = "grey90", size=1.5) + theme_bw()


arrowmat <- vegan::scores(metroCAP.ORD, display="bp")
arrowdf <- data.frame(labels=rownames(arrowmat), arrowmat)



# Define the arrow aesthetic mapping

arrow_map <- aes(xend = CAP1, 

    yend = CAP2, 
    x = 0, 
    y = 0, 
    shape = NULL, 
    color = NULL, 
    label = labels)


label_map <- aes(x = 1.3 * CAP1, 

    y = 1.3 * CAP2, 
    shape = NULL, 
    color = NULL, 
    label = labels)



arrowhead = arrow(length = unit(0.02, "npc"))



cap_plot  + 

  geom_segment(
    mapping = arrow_map, 
    size = .5, 
    data = arrowdf, 
    color = "gray", 
    arrow = arrowhead

  ) + 

  geom_text(
    mapping = label_map, 
    size = 2,  
    data = arrowdf, 
    show.legend = FALSE
  )


an <- anova(metroCAP.ORD, permutations=9999)
an
Warning message in UniFrac(physeq, ...):
“Randomly assigning root as -- 483347 -- in the phylogenetic tree in the data you provided.”


Call: capscale(formula = distance ~ people_affluence + line_number +
sample_type, data = data)

              Inertia Proportion Rank
Total           9.658      1.000     
Constrained     2.916      0.302   13
Unconstrained   6.742      0.698   33
Inertia is squared Unknown distance 

Eigenvalues for constrained axes:
  CAP1   CAP2   CAP3   CAP4   CAP5   CAP6   CAP7   CAP8   CAP9  CAP10  CAP11 
0.5091 0.3887 0.2638 0.2260 0.1938 0.1891 0.1831 0.1784 0.1685 0.1597 0.1544 
 CAP12  CAP13 
0.1524 0.1493 

Eigenvalues for unconstrained axes:
  MDS1   MDS2   MDS3   MDS4   MDS5   MDS6   MDS7   MDS8 
0.8651 0.4654 0.2943 0.2581 0.2456 0.2212 0.2101 0.2050 
(Showing 8 of 33 unconstrained eigenvalues)



Warning message:
“Ignoring unknown aesthetics: label”
<th scope=col>Df</th><th scope=col>SumOfSqs</th><th scope=col>F</th><th scope=col>Pr(>F)</th><th scope=row>Model</th><th scope=row>Residual</th>
13 2.9163201.0981230.0385
33 6.741473 NA NA

png

metroCAP.ORD <- ordinate(metro, "CAP", "unifrac", ~ people_affluence + line_number + sample_type + Shannon + Observed)

metroCAP.ORD

cap_plot <- plot_ordination(metro, metroCAP.ORD, color="line_number", axes =c(1,2)) + aes(shape= sample_type) + geom_point(aes(colour = line_number), alpha=0.4, size=4) + geom_point(colour = "grey90", size=1.5) + theme_bw()


arrowmat <- vegan::scores(metroCAP.ORD, display="bp")
arrowdf <- data.frame(labels=rownames(arrowmat), arrowmat)



# Define the arrow aesthetic mapping

arrow_map <- aes(xend = CAP1, 

    yend = CAP2, 
    x = 0, 
    y = 0, 
    shape = NULL, 
    color = NULL, 
    label = labels)


label_map <- aes(x = 1.3 * CAP1, 

    y = 1.3 * CAP2, 
    shape = NULL, 
    color = NULL, 
    label = labels)



arrowhead = arrow(length = unit(0.02, "npc"))



cap_plot  + 

  geom_segment(
    mapping = arrow_map, 
    size = .5, 
    data = arrowdf, 
    color = "gray", 
    arrow = arrowhead

  ) + 

  geom_text(
    mapping = label_map, 
    size = 2,  
    data = arrowdf, 
    show.legend = FALSE
  )


an <- anova(metroCAP.ORD, permutations=9999)
an
Warning message in UniFrac(physeq, ...):
“Randomly assigning root as -- 498032 -- in the phylogenetic tree in the data you provided.”


Call: capscale(formula = distance ~ people_affluence + line_number +
sample_type + Shannon + Observed, data = data)

              Inertia Proportion Rank
Total          9.6597     1.0000     
Constrained    3.9484     0.4088   15
Unconstrained  5.7112     0.5912   31
Inertia is squared Unknown distance 

Eigenvalues for constrained axes:
  CAP1   CAP2   CAP3   CAP4   CAP5   CAP6   CAP7   CAP8   CAP9  CAP10  CAP11 
1.0432 0.4906 0.2780 0.2558 0.2105 0.1894 0.1863 0.1799 0.1753 0.1719 0.1640 
 CAP12  CAP13  CAP14  CAP15 
0.1543 0.1540 0.1491 0.1459 

Eigenvalues for unconstrained axes:
  MDS1   MDS2   MDS3   MDS4   MDS5   MDS6   MDS7   MDS8 
0.4618 0.2787 0.2567 0.2530 0.2238 0.2129 0.1969 0.1939 
(Showing 8 of 31 unconstrained eigenvalues)



Warning message:
“Ignoring unknown aesthetics: label”
<th scope=col>Df</th><th scope=col>SumOfSqs</th><th scope=col>F</th><th scope=col>Pr(>F)</th><th scope=row>Model</th><th scope=row>Residual</th>
15 3.9484451.4287881e-04
31 5.711218 NA NA

png

metroCAP.ORD <- ordinate(metro, "CAP", "unifrac", ~ people_affluence + line_number + sample_type + Shannon + Observed + station + train_track)
#metroCAP.ORD <- ordinate(metro, "CAP", "unifrac", ~ people_affluence + line_number + sample_type + Shannon + Observed + Humidity + station_notes+ station)

metroCAP.ORD

cap_plot <- plot_ordination(metro, metroCAP.ORD, color="line_number", axes =c(1,2)) + aes(shape= sample_type) + geom_point(aes(colour = line_number), alpha=0.4, size=4) + geom_point(colour = "grey90", size=1.5) + theme_bw()


arrowmat <- vegan::scores(metroCAP.ORD, display="bp")
arrowdf <- data.frame(labels=rownames(arrowmat), arrowmat)



# Define the arrow aesthetic mapping

arrow_map <- aes(xend = CAP1, 

    yend = CAP2, 
    x = 0, 
    y = 0, 
    shape = NULL, 
    color = NULL, 
    label = labels)


label_map <- aes(x = 1.3 * CAP1, 

    y = 1.3 * CAP2, 
    shape = NULL, 
    color = NULL, 
    label = labels)



arrowhead = arrow(length = unit(0.02, "npc"))



cap_plot  + 

  geom_segment(
    mapping = arrow_map, 
    size = .5, 
    data = arrowdf, 
    color = "gray", 
    arrow = arrowhead

  ) + 

  geom_text(
    mapping = label_map, 
    size = 2,  
    data = arrowdf, 
    show.legend = FALSE
  )


an <- anova(metroCAP.ORD, permutations=9999)
an
Warning message in UniFrac(physeq, ...):
“Randomly assigning root as -- 442685 -- in the phylogenetic tree in the data you provided.”


Call: capscale(formula = distance ~ people_affluence + line_number +
sample_type + Shannon + Observed + station + train_track, data = data)

              Inertia Proportion Rank
Total          9.6596     1.0000     
Constrained    4.5076     0.4666   18
Unconstrained  5.1520     0.5334   28
Inertia is squared Unknown distance 
Some constraints were aliased because they were collinear (redundant)

Eigenvalues for constrained axes:
  CAP1   CAP2   CAP3   CAP4   CAP5   CAP6   CAP7   CAP8   CAP9  CAP10  CAP11 
1.0475 0.4928 0.3378 0.2837 0.2131 0.1951 0.1895 0.1805 0.1783 0.1754 0.1698 
 CAP12  CAP13  CAP14  CAP15  CAP16  CAP17  CAP18 
0.1573 0.1553 0.1544 0.1510 0.1463 0.1411 0.1388 

Eigenvalues for unconstrained axes:
  MDS1   MDS2   MDS3   MDS4   MDS5   MDS6   MDS7   MDS8 
0.3975 0.2678 0.2541 0.2423 0.2220 0.2052 0.1953 0.1885 
(Showing 8 of 28 unconstrained eigenvalues)



Warning message:
“Ignoring unknown aesthetics: label”
<th scope=col>Df</th><th scope=col>SumOfSqs</th><th scope=col>F</th><th scope=col>Pr(>F)</th><th scope=row>Model</th><th scope=row>Residual</th>
18 4.5075981.3609911e-04
28 5.151997 NA NA

png

metroCAP.ORD <- ordinate(metro, "CAP", "wunifrac", ~ people_affluence + sample_type + Shannon + Observed + station + train_track)
#metroCAP.ORD <- ordinate(metro, "CAP", "unifrac", ~ people_affluence + line_number + sample_type + Shannon + Observed + Humidity + station_notes+ station)

metroCAP.ORD

cap_plot <- plot_ordination(metro, metroCAP.ORD, color="line_number", axes =c(1,2)) + aes(shape= sample_type) + geom_point(aes(colour = line_number), alpha=0.4, size=4) + geom_point(colour = "grey90", size=1.5) + theme_bw()


arrowmat <- vegan::scores(metroCAP.ORD, display="bp")
arrowdf <- data.frame(labels=rownames(arrowmat), arrowmat)



# Define the arrow aesthetic mapping

arrow_map <- aes(xend = CAP1, 

    yend = CAP2, 
    x = 0, 
    y = 0, 
    shape = NULL, 
    color = NULL, 
    label = labels)


label_map <- aes(x = 1.3 * CAP1, 

    y = 1.3 * CAP2, 
    shape = NULL, 
    color = NULL, 
    label = labels)



arrowhead = arrow(length = unit(0.02, "npc"))



cap_plot  + 

  geom_segment(
    mapping = arrow_map, 
    size = .5, 
    data = arrowdf, 
    color = "gray", 
    arrow = arrowhead

  ) + 

  geom_text(
    mapping = label_map, 
    size = 2,  
    data = arrowdf, 
    show.legend = FALSE
  )


an <- anova(metroCAP.ORD, permutations=9999)
an
Warning message in UniFrac(physeq, weighted = TRUE, ...):
“Randomly assigning root as -- 642970 -- in the phylogenetic tree in the data you provided.”


Call: capscale(formula = distance ~ people_affluence + sample_type +
Shannon + Observed + station + train_track, data = data)

               Inertia Proportion Rank
Total          0.87471    1.00000     
Constrained    0.28134    0.32164    8
Unconstrained  0.62008    0.70889   34
Imaginary     -0.02671   -0.03053   12
Inertia is squared Unknown distance 
Some constraints were aliased because they were collinear (redundant)

Eigenvalues for constrained axes:
   CAP1    CAP2    CAP3    CAP4    CAP5    CAP6    CAP7    CAP8 
0.11058 0.08038 0.04930 0.01734 0.00723 0.00676 0.00572 0.00405 

Eigenvalues for unconstrained axes:
   MDS1    MDS2    MDS3    MDS4    MDS5    MDS6    MDS7    MDS8 
0.17549 0.10677 0.06742 0.05442 0.03344 0.02810 0.02226 0.01881 
(Showing 8 of 34 unconstrained eigenvalues)



Warning message:
“Ignoring unknown aesthetics: label”
<th scope=col>Df</th><th scope=col>SumOfSqs</th><th scope=col>F</th><th scope=col>Pr(>F)</th><th scope=row>Model</th><th scope=row>Residual</th>
8 0.28134432.155196 1e-04
38 0.6200762 NA NA

png

metro
metrito <- get_variable(metro, "sample_type") 

sample_data(metro)$metrito <- factor(metrito)

colorCodes <- levels(metrito)
library(doParallel)
library(RColorBrewer)

#sample_data(march_subset)

camaronUF <- UniFrac(metro, weighted=FALSE, parallel=TRUE)

#colorScale <- colors()[c(26,51,76)]

#colorScale    <-rainbow(length(levels(get_variable(march_subset, "marchantita"))))

colorScale    <- brewer.pal(length(levels(get_variable(metro, "metrito"))),"Dark2")

#colorScale

cols <- colorScale[get_variable(metro, "metrito")] 

#cols

#march.tip.labels <- as(get_variable(march_subset, "marchantita"), "character")

# This is the actual hierarchical clustering call, specifying average-link clustering

camaron.hclust     <- hclust(camaronUF, method="average")

library(dendextend)

dend <- as.dendrogram(camaron.hclust)

labels_colors(dend) <- cols[order.dendrogram(dend)]


dend %>% set("labels_cex", .75) %>% plot(main="Unifrac unweighted distances",horiz=T) 

#ggplot(dend, horiz=T)
phyloseq-class experiment-level object
otu_table()   OTU Table:         [ 50183 taxa and 47 samples ]
sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
phy_tree()    Phylogenetic Tree: [ 50183 tips and 50181 internal nodes ]


Loading required package: foreach

Attaching package: ‘foreach’

The following objects are masked from ‘package:purrr’:

    accumulate, when

Loading required package: iterators
Loading required package: parallel
Warning message in UniFrac(metro, weighted = FALSE, parallel = TRUE):
“Randomly assigning root as -- 413998 -- in the phylogenetic tree in the data you provided.”Warning message in brewer.pal(length(levels(get_variable(metro, "metrito"))), "Dark2"):
“minimal value for n is 3, returning requested palette with 3 different levels
”
---------------------
Welcome to dendextend version 1.10.0
Type citation('dendextend') for how to cite the package.

Type browseVignettes(package = 'dendextend') for the package vignette.
The github page is: https://github.com/talgalili/dendextend/

Suggestions and bug-reports can be submitted at: https://github.com/talgalili/dendextend/issues
Or contact: <tal.galili@gmail.com>

	To suppress this message use:  suppressPackageStartupMessages(library(dendextend))
---------------------


Attaching package: ‘dendextend’

The following objects are masked from ‘package:ape’:

    ladderize, rotate

The following object is masked from ‘package:permute’:

    shuffle

The following object is masked from ‘package:stats’:

    cutree

png

metrito <- get_variable(metro, "sample_type") 

sample_data(metro)$metrito <- factor(metrito)

colorCodes <- levels(metrito)
library(doParallel)
library(RColorBrewer)

#sample_data(march_subset)

camaronUF <- UniFrac(metro, weighted=TRUE, parallel=TRUE)

#colorScale <- colors()[c(26,51,76)]

#colorScale    <-rainbow(length(levels(get_variable(march_subset, "marchantita"))))

colorScale    <- brewer.pal(length(levels(get_variable(metro, "metrito"))),"Dark2")

#colorScale

cols <- colorScale[get_variable(metro, "metrito")] 

#cols

#march.tip.labels <- as(get_variable(march_subset, "marchantita"), "character")

# This is the actual hierarchical clustering call, specifying average-link clustering

camaron.hclust     <- hclust(camaronUF, method="average")

library(dendextend)

dend <- as.dendrogram(camaron.hclust)

labels_colors(dend) <- cols[order.dendrogram(dend)]
rev(dend %>% labels)
#dend %>%  ("labels", id)
dend %>% set("labels_cex", .75) %>% plot(main="Unifrac weighted distances",horiz=T) 

#ggplot(dend, horiz=T)
Warning message in UniFrac(metro, weighted = TRUE, parallel = TRUE):
“Randomly assigning root as -- 488900 -- in the phylogenetic tree in the data you provided.”Warning message in brewer.pal(length(levels(get_variable(metro, "metrito"))), "Dark2"):
“minimal value for n is 3, returning requested palette with 3 different levels
”

<ol class=list-inline> <li>‘AM33’</li> <li>‘AM31’</li> <li>‘AM38’</li> <li>‘AM20’</li> <li>‘AM37’</li> <li>‘AM34’</li> <li>‘AM15’</li> <li>‘AM12’</li> <li>‘AM27’</li> <li>‘AM01’</li> <li>‘AM24’</li> <li>‘AM17’</li> <li>‘AM18’</li> <li>‘AM46’</li> <li>‘AM06’</li> <li>‘AM42’</li> <li>‘AM32’</li> <li>‘AM48’</li> <li>‘AM29’</li> <li>‘AM36’</li> <li>‘AM45’</li> <li>‘AM39’</li> <li>‘AM28’</li> <li>‘AM35’</li> <li>‘AM41’</li> <li>‘AM40’</li> <li>‘AM30’</li> <li>‘AM04’</li> <li>‘AM21’</li> <li>‘AM09’</li> <li>‘AM07’</li> <li>‘AM16’</li> <li>‘AM14’</li> <li>‘AM11’</li> <li>‘AM05’</li> <li>‘AM26’</li> <li>‘AM02’</li> <li>‘AM19’</li> <li>‘AM03’</li> <li>‘AM08’</li> <li>‘AM10’</li> <li>‘AM44’</li> <li>‘AM47’</li> <li>‘AM13’</li> <li>‘AM43’</li> <li>‘AM23’</li> <li>‘AM22’</li> </ol>

png

#Aquí podemos pedir los datos en orden del dendrograma anterior
data_clustering <-sample_data(metro)[c('AM48', 'AM29', 'AM36', 'AM45', 'AM39', 'AM28', 'AM35', 'AM41', 'AM40', 'AM30', 'AM42', 'AM32', 'AM38', 'AM20', 'AM37', 'AM34', 'AM06', 'AM15', 'AM12', 'AM27', 'AM01', 'AM33', 'AM31', 'AM24', 'AM17', 'AM18', 'AM46', 'AM03', 'AM26', 'AM02', 'AM19', 'AM08', 'AM04', 'AM21', 'AM09', 'AM07', 'AM16', 
                            'AM14', 'AM11', 'AM05', 'AM13', 'AM10', 'AM44', 'AM47', 'AM43', 'AM23', 'AM22')]
data_clustering
<th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>temperature_C</th><th scope=col>Humidity</th><th scope=col>length_underground</th><th scope=col>⋯</th><th scope=col>weather</th><th scope=col>stations_number</th><th scope=col>latitude</th><th scope=col>longitude</th><th scope=col>people_affluence</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>metrito</th><th scope=row>AM48</th><th scope=row>AM29</th><th scope=row>AM36</th><th scope=row>AM45</th><th scope=row>AM39</th><th scope=row>AM28</th><th scope=row>AM35</th><th scope=row>AM41</th><th scope=row>AM40</th><th scope=row>AM30</th><th scope=row>AM42</th><th scope=row>AM32</th><th scope=row>AM38</th><th scope=row>AM20</th><th scope=row>AM37</th><th scope=row>AM34</th><th scope=row>AM06</th><th scope=row>AM15</th><th scope=row>AM12</th><th scope=row>AM27</th><th scope=row>AM01</th><th scope=row>AM33</th><th scope=row>AM31</th><th scope=row>AM24</th><th scope=row>AM17</th><th scope=row>AM18</th><th scope=row>AM46</th><th scope=row>AM03</th><th scope=row>AM26</th><th scope=row>AM02</th><th scope=row>AM19</th><th scope=row>AM08</th><th scope=row>AM04</th><th scope=row>AM21</th><th scope=row>AM09</th><th scope=row>AM07</th><th scope=row>AM16</th><th scope=row>AM14</th><th scope=row>AM11</th><th scope=row>AM05</th><th scope=row>AM13</th><th scope=row>AM10</th><th scope=row>AM44</th><th scope=row>AM47</th><th scope=row>AM43</th><th scope=row>AM23</th><th scope=row>AM22</th>
Train_12_AM48 Train AM48 12 Pasamanos 04/05/16 12:15:00 PM 27.8 35 11.400 NA 20 NA NA 23252166 6276 11209.1530 5.719053 0.9778587 Pasamanos
Train_5_AM29 Train AM29 5 Pasamanos 2029-04-16 01:30:00 PM 30.0 30 4.951 NA 13 NA NA 20137141 10132 15290.4044 6.630566 0.9913819 Pasamanos
Train_12_AM36 Train AM36 12 Pasamanos 04/05/16 12:05:00 PM 27.6 37 11.400 NA 20 NA NA 23252166 5417 8395.8199 5.586619 0.9792690 Pasamanos
Train_9_AM45 Train AM45 9 Pasamanos 04/05/16 02:06:00 PM 32.3 30 9.531 NA 12 NA NA 27481033 7537 13035.0540 5.930178 0.9846474 Pasamanos
Train_3_AM39 Train AM39 3 Pasamanos 2027-04-16 11:55:00 AM 29.3 32 18.145 NA 21 NA NA 54258403 10797 17180.8546 6.959298 0.9918087 Pasamanos
Train_4_AM28 Train AM28 4 Pasamanos 02/05/16 01:35:00 PM 32.7 26 0.000 NA 10 NA NA 7146862 9462 14163.1439 6.094343 0.9762382 Pasamanos
Train_B_AM35 Train AM35 11(B) Pasamanos 02/05/16 12:50:00 PM 31.3 26 5.380 NA 21 NA NA 39089567 12798 18649.0118 6.599621 0.9823035 Pasamanos
Train_5_AM41 Train AM41 5 Pasamanos 2029-04-16 01:29:00 PM 30.2 30 4.951 NA 13 NA NA 20137141 10059 16798.6952 6.477517 0.9845608 Pasamanos
Train_4_AM40 Train AM40 4 Pasamanos 02/05/16 01:20:00 PM 33.3 25 0.000 NA 10 NA NA 7146862 8300 14041.7794 6.150936 0.9841486 Pasamanos
Train_6_AM30 Train AM30 6 Pasamanos 2029-04-16 12:50:00 PM 28.8 30 11.858 NA 11 NA NA 11810259 13152 18221.9013 7.384370 0.9945888 Pasamanos
Train_6_AM42 Train AM42 6 Pasamanos 2029-04-16 01:05:00 PM 29.3 32 11.858 NA 11 NA NA 11810259 9366 15260.6495 6.546484 0.9872067 Pasamanos
Train_8_AM32 Train AM32 8 Pasamanos 03/05/16 01:29:00 PM 31.6 34 14.301 NA 19 NA NA 32295124 8720 13347.2676 5.979671 0.9801986 Pasamanos
Train_2_AM38 Train AM38 2 Pasamanos 2028-04-16 12:23:00 PM 31.1 26 12.550 NA 24 NA NA 66232325 9433 16615.3383 6.409898 0.9840072 Pasamanos
San_Juan_de_Letran_8 San_Juan_de_Letran AM20 8 Torniquete 2028-04-16 01:26:00 PM 30.6 27 14.301 C1 19 19.43208 -99.14043 2636193 15301 22159.6747 7.069152 0.9893587 Torniquete
Train_1_AM37 Train AM37 1 Pasamanos 2028-04-16 02:25:00 PM 32.5 27 16.786 NA 20 NA NA 61536150 10832 16300.2735 6.326441 0.9843355 Pasamanos
Train_A_AM34 Train AM34 10(A) Pasamanos 03/05/16 11:38:00 AM 27.9 41 2.041 NA 10 NA NA 23624923 10217 15301.1594 6.351111 0.9869890 Pasamanos
Observatorio_1 Observatorio AM06 1 Torniquete 04/05/16 02:35:00 PM 32.2 28 16.786 C2 20 19.39850 -99.19978 6489055 10523 17035.5115 6.437592 0.9859032 Torniquete
Ciudad_Azteca_B Ciudad_Azteca AM15 11(B) Torniquete 02/05/16 12:43:00 PM 30.8 26 5.380 B1 21 19.53480 -99.02685 5604284 14683 21531.2137 7.348567 0.9953176 Torniquete
Constitucion_de_1917_8 Constitucion_de_1917 AM12 8 Torniquete 03/05/16 01:10:00 PM 32.1 34 14.301 C1 19 19.34440 -99.06317 7934733 15486 23052.1355 7.099528 0.9923300 Torniquete
Train_3_AM27 Train AM27 3 Pasamanos 2027-04-16 11:25:00 AM 29.3 35 18.145 NA 21 NA NA 54258403 10527 15722.5523 6.375218 0.9885645 Pasamanos
Indios_verdes_3 Indios_verdes AM01 3 Torniquete 02/05/16 02:23:00 PM 30.4 27 18.145 C1 21 19.49550 -99.11940 10176457 12677 19699.2193 7.160039 0.9921556 Torniquete
Train_9_AM33 Train AM33 9 Pasamanos 04/05/16 01:50:00 PM 32.1 30 9.531 NA 12 NA NA 27481033 10660 15633.6634 6.266153 0.9834099 Pasamanos
Train_7_AM31 Train AM31 7 Pasamanos 2027-04-16 12:35:00 PM 29.7 30 17.754 NA 14 NA NA 24196452 7061 11649.5273 6.004058 0.9867547 Pasamanos
Chilpancingo_9 Chilpancingo AM24 9 Torniquete 2027-04-16 01:25:00 PM 31.3 26 9.531 C1 12 19.40603 -99.16841 3893446 14974 21959.0205 7.019853 0.9916148 Torniquete
Deportivo_18_de_marzo_3 Deportivo_18_de_marzo AM17 3 Torniquete 02/05/16 02:07:00 PM 30.7 26 18.145 C1 21 19.48635 -99.12493 3152077 16179 22648.8274 7.147670 0.9914642 Torniquete
Tacuba_2 Tacuba AM18 2 Torniquete 2029-04-16 12:05:00 PM 29.6 29 12.550 C1 24 19.45954 -99.18796 3166159 13648 20406.5901 7.303358 0.9950687 Torniquete
Train_A_AM46 Train AM46 10(A) Pasamanos 03/05/16 11:30:00 AM 27.1 41 2.041 NA 10 NA NA 23624923 9700 16349.4226 6.599719 0.9881328 Pasamanos
Rosario_7 Rosario AM03 7 Torniquete 2029-04-16 12:40:00 PM 29.2 29 17.754 C1 14 19.50500 -99.17970 3220719 11986 18521.1304 6.718174 0.9892510 Torniquete
Train_2_AM26 Train AM26 2 Pasamanos 2029-04-16 12:09:00 PM 30.9 29 12.550 NA 24 NA NA 66232325 7655 12114.5135 5.974409 0.9797120 Pasamanos
Instituto_del_petroleo_5Instituto_del_petroleo AM02 5 Torniquete 2029-04-16 01:17:00 PM 28.3 30 4.951 C1 13 19.48900 -99.14480 499350 10722 16496.3811 6.417885 0.9890120 Torniquete
M_Muzquiz_B M_Muzquiz AM19 11(B) Torniquete 02/05/16 12:30:00 PM 30.8 28 5.380 B1 21 19.50148 -99.04152 2990086 15537 21636.1907 7.306974 0.9943667 Torniquete
Universidad_3 Universidad AM08 3 Torniquete 2027-04-16 11:44:00 AM 28.6 31 18.145 C2 21 19.32440 -99.17334 6353423 13365 19368.0566 6.863281 0.9770414 Torniquete
Cuatro_caminos_2 Cuatro_caminos AM04 2 Torniquete 2029-04-16 11:42:00 AM 30.3 30 12.550 C2 24 19.46060 -99.21550 9523016 5425 8341.2612 6.283001 0.9939737 Torniquete
Zocalo_2 Zocalo AM21 2 Torniquete 2028-04-16 11:42:00 AM 29.1 31 12.550 C1 24 19.43318 -99.13190 6118795 5333 8540.1957 6.081414 0.9913824 Torniquete
Tasqueͱa_2 Tasqueͱa AM09 2 Torniquete 2027-04-16 10:50:00 AM 25.9 38 12.550 C1 24 19.34390 -99.13900 6856836 6755 10879.8963 6.235386 0.9901215 Torniquete
Barranca_del_muerto_7 Barranca_del_muerto AM07 7 Torniquete 2027-04-16 12:20:00 PM 28.6 28 17.754 C2 14 19.36168 -99.18882 3347042 7810 11643.9257 6.503181 0.9937495 Torniquete
Martin_Carera_6 Martin_Carera AM16 6 Torniquete 02/05/16 01:46:00 PM 30.2 26 11.858 C1 11 19.48520 -99.10378 2308196 14164 19905.8449 7.361922 0.9959966 Torniquete
Pantitlan_A Pantitlan AM14 10(A) Torniquete 03/05/16 11:25:00 AM 26.9 41 2.041 B1 10 19.41615 -99.07430 10023285 4016 6100.1759 5.074411 0.9648601 Torniquete
Buenavista_B Buenavista AM11 11(B) Torniquete 2028-04-16 01:04:00 PM 31.3 27 5.380 C1 21 19.44676 -99.15219 4866765 8951 13604.9670 6.110651 0.9830762 Torniquete
Tacubaya_9 Tacubaya AM05 9 Torniquete 2027-04-16 01:41:00 PM 30.4 26 9.531 C1 12 19.40240 -99.18830 4190568 428 840.2462 5.309640 0.9899266 Torniquete
La_paz_A_AM13 La_paz AM13 10(A) Torniquete 03/05/16 12:02:00 PM 29.1 37 2.041 C1 10 19.35071 -98.96045 2772477 10634 15375.8486 6.719213 0.9884320 Torniquete
Tlahuac_12 Tlahuac AM10 12 Torniquete 04/05/16 12:40:00 PM 28.5 29 11.400 C1 20 19.28920 -99.01460 2997741 11069 16534.9471 6.757451 0.9919831 Torniquete
Train_8_AM44 Train AM44 8 Pasamanos 03/05/16 01:20:00 PM 31.4 33 14.301 NA 19 NA NA 32295124 8942 14530.2892 5.542649 0.9585853 Pasamanos
Train_B_AM47 Train AM47 11(B) Pasamanos 02/05/16 12:39:00 PM 31.2 29 5.380 NA 21 NA NA 39089567 8438 14052.7740 5.699643 0.9648375 Pasamanos
Train_7_AM43 Train AM43 7 Pasamanos 2027-04-16 12:57:00 PM 31.0 29 17.754 NA 14 NA NA 24196452 7366 12618.1402 5.804439 0.9658138 Pasamanos
Merced_1 Merced AM23 1 Torniquete 2029-04-16 02:30:00 PM 31.4 30 16.786 B1 20 19.42579 -99.12501 4377638 10129 14588.9649 6.023258 0.9370759 Torniquete
Insurgentes_1 Insurgentes AM22 1 Torniquete 2028-04-16 02:20:00 PM 32.2 27 16.786 C1 20 19.42393 -99.16288 5297208 2825 4282.2108 4.101923 0.8984457 Torniquete
#para hacer el càlculo se obtienen las listas de OTUs por cada condición a comparar, luego usamos http://bioinformatics.psb.ugent.be/cgi-bin/liste/Venn/calculate_venn.htpl para armar los diagramas de Venn y las listas resultantes. 
merge1 = merge_samples(metro, "sample_type")
write.table(t(otu_table(merge1)), "tmp")
df <-read.table("tmp", header=T, row.names = 1)
k <- which(df>=1, arr.ind=TRUE)
df[k] <- rownames(k)

write.table(df,"Venn_input.txt")
for (ci in 1:ncol(df)) {
    write.csv(df[,ci], paste("col", ci, ".tsv", sep = ""))
}

#cortar columnas 2 y 3, quitar 0s de Venn_input.txt la primer columna es de identificadores
#awk '{print $2"\t"$3}' Venn_input.txt | perl -pe 's/\"0\"//g;s/\"//g'  


# library(devtools)
# devtools::install_github("hms-dbmi/UpSetR")
merge2 = merge_samples(metro, "train_track")
merge2 <- as.table(t(otu_table(merge2)))
merge2 <- replace(merge2, merge2>0, 1)
write.table(merge2,"merge2.tmp")
merge2 <- read.table("merge2.tmp", header=TRUE, row.names = 1)
head(merge2)
#merge2[order(rowSums(merge2),decreasing=T),] #
#aquí hay diferencias significativas en diversidad, que OTUs son los únicos
#upset(merge2, sets = c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12'), 
 #     sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on")
<th scope=col>Ferreo</th><th scope=col>Neumatico</th><th scope=row>478530</th><th scope=row>471453</th><th scope=row>477065</th><th scope=row>438378</th><th scope=row>438943</th><th scope=row>450910</th>
11
01
11
11
01
11
library(UpSetR)
library(grid)
# movies <- read.csv( system.file("extdata", "movies.csv", package = "UpSetR"), header=T, sep=";" )
# mutations <- read.csv( system.file("extdata", "mutations.csv", package = "UpSetR"), header=T, sep = ",")
otu <- read.table("metro2_wosingletons_otu_table.txt", header=T, row.names = 1) 
head(otu)
# head(mutations)

otu <- replace(otu, otu>0, 1)

head(otu)

upset(otu, sets = c('AM48', 'AM29', 'AM36', 'AM45', 'AM39', 'AM28', 'AM35', 'AM41', 'AM40', 'AM30', 'AM42', 'AM32'  
                   ), 
      sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "off")



<th scope=col>AM03</th><th scope=col>AM23</th><th scope=col>AM17</th><th scope=col>AM01</th><th scope=col>AM02</th><th scope=col>AM06</th><th scope=col>AM07</th><th scope=col>AM08</th><th scope=col>AM09</th><th scope=col>AM10</th><th scope=col>⋯</th><th scope=col>AM47</th><th scope=col>AM04</th><th scope=col>AM13</th><th scope=col>AM35</th><th scope=col>AM36</th><th scope=col>AM40</th><th scope=col>AM43</th><th scope=col>AM44</th><th scope=col>AM48</th><th scope=col>AM05</th><th scope=row>0</th><th scope=row>2</th><th scope=row>4</th><th scope=row>9</th><th scope=row>13</th><th scope=row>16</th>
365114 192 211600 507 287 220190 467 69208 131145 182 181 75 83 219 0
57 76 76 396222 78 509 33260 605 28858 511 44 249 166 30 22 105 0
0 0 3 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
2 4 2 2 3 0 0 0 2 0 3 0 0 1 0 0 0 0 0 0
12 9 22 21 12 2 3 28 2 21 6 3 13 14 2 16 2 1 1 0
1358350 18002249930 854 712 1492453 67941863274 3947625 579 483 1080421 679 9
<th scope=col>AM03</th><th scope=col>AM23</th><th scope=col>AM17</th><th scope=col>AM01</th><th scope=col>AM02</th><th scope=col>AM06</th><th scope=col>AM07</th><th scope=col>AM08</th><th scope=col>AM09</th><th scope=col>AM10</th><th scope=col>⋯</th><th scope=col>AM47</th><th scope=col>AM04</th><th scope=col>AM13</th><th scope=col>AM35</th><th scope=col>AM36</th><th scope=col>AM40</th><th scope=col>AM43</th><th scope=col>AM44</th><th scope=col>AM48</th><th scope=col>AM05</th><th scope=row>0</th><th scope=row>2</th><th scope=row>4</th><th scope=row>9</th><th scope=row>13</th><th scope=row>16</th>
11111111111111111110
11111111111111111110
00100001000000000000
11111000101001000000
11111111111111111110
11111111111111111111

png


# devtools::install_github("r-lib/svglite")
library(svglite)
library(ggplot2)
merge2 = merge_samples(metro, "line_number")
merge2 <- as.table(t(otu_table(merge2)))
merge2 <- replace(merge2, merge2>0, 1)
write.table(merge2,"merge2.tmp")
merge2 <- read.table("merge2.tmp", header=TRUE, row.names = 1)
upset(merge2, sets = c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12'), 
      sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "off", nintersects = 20)
#merge2[order(rowSums(merge2),decreasing=T),] #
svg("otus.svg")
upset(merge2, sets = c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12'), 
      sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on", nintersects = 20)
# ggsave(file="otus.pdf", width=10, height=8)
dev.off()

png: 2

png

merge2 = merge_samples(metro, "station")
merge2 <- as.table(t(otu_table(merge2)))
merge2 <- replace(merge2, merge2>0, 1)
write.table(merge2,"merge2.tmp")
merge2 <- read.table("merge2.tmp", header=TRUE, row.names = 1)
head(merge2)
#merge2[order(rowSums(merge2),decreasing=T),] #

upset(merge2, sets = c('Terminal_correspondencia','Paso','Train','Correspondecia'), 
      sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on")
<th scope=col>Correspondecia</th><th scope=col>Paso</th><th scope=col>Terminal</th><th scope=col>Terminal_correspondencia</th><th scope=col>Train</th><th scope=row>478530</th><th scope=row>471453</th><th scope=row>477065</th><th scope=row>438378</th><th scope=row>438943</th><th scope=row>450910</th>
01111
01111
11111
11111
10011
11111

png

merge2 = merge_samples(metro, "station_notes")
merge2 <- as.table(t(otu_table(merge2)))
merge2 <- replace(merge2, merge2>0, 1)
write.table(merge2,"merge2.tmp")
merge2 <- read.table("merge2.tmp", header=TRUE, row.names = 1)
head(merge2)
#merge2[order(rowSums(merge2),decreasing=T),] #

upset(merge2, sets = c('Elevada','Superficial','Tunel','Cajon_subterraneo'), 
      sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on")


Warning message in rowsum.default(x2, group):
“missing values for 'group'”
<th scope=col>Cajon_subterraneo</th><th scope=col>Elevada</th><th scope=col>Superficial</th><th scope=col>Tunel</th><th scope=row>478530</th><th scope=row>471453</th><th scope=row>477065</th><th scope=row>438378</th><th scope=row>438943</th><th scope=row>450910</th>
1100
1100
1101
1111
1100
1111

png

merge2 = merge_samples(metro, "line_number")
merge2 <- as.table(t(otu_table(merge2)))
merge2 <- replace(merge2, merge2>0, 1)
write.table(merge2,"merge2.tmp")

merge2 <- read.table("merge2.tmp", header=TRUE, row.names = 1)
head(merge2)
#merge2[order(rowSums(merge2),decreasing=T),] #
upset(merge2, sets = c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12'), 
      sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on")


upset(merge2, sets = c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12'), 
      sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on")
<th scope=col>X1</th><th scope=col>X12</th><th scope=col>X2</th><th scope=col>X3</th><th scope=col>X4</th><th scope=col>X5</th><th scope=col>X6</th><th scope=col>X7</th><th scope=col>X8</th><th scope=col>X9</th><th scope=col>A</th><th scope=col>B</th><th scope=row>478530</th><th scope=row>471453</th><th scope=row>477065</th><th scope=row>438378</th><th scope=row>438943</th><th scope=row>450910</th>
000001010110
000101101101
100001111111
001101011111
000101100001
111111111111

png

png

metro = phyloseq (OTU, sampledata, taxi, phy_tree(tree))
x3 <- tax_glom(metro, taxrank="Genus")
head(otu_table(x3))
mergebis = merge_samples(x3, "line_number")
head(otu_table(mergebis))
     write.table(t(otu_table(mergebis)),"heatmap_core-OTUS-LINEs.csv",sep="\t")
     write.table(tax_table(mergebis),"heatmap_core-OTUS-LINEStax.csv",sep="\t")
<th scope=col>AM03</th><th scope=col>AM23</th><th scope=col>AM17</th><th scope=col>AM01</th><th scope=col>AM02</th><th scope=col>AM06</th><th scope=col>AM07</th><th scope=col>AM08</th><th scope=col>AM09</th><th scope=col>AM10</th><th scope=col>⋯</th><th scope=col>AM47</th><th scope=col>AM04</th><th scope=col>AM13</th><th scope=col>AM35</th><th scope=col>AM36</th><th scope=col>AM40</th><th scope=col>AM43</th><th scope=col>AM44</th><th scope=col>AM48</th><th scope=col>AM05</th><th scope=row>459240</th><th scope=row>426444</th><th scope=row>450333</th><th scope=row>447009</th><th scope=row>399085</th><th scope=row>411630</th>
0 12 2 1 0 1 0 0 0 1 0 11 0 0 0 0 0 6 0 0
63 75103 616 121 86 274145 321 56 27 273 59 22 2501042 37 87 22 3
1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
12 9 26 15 7 9 8 2 7 9 21 35 9 6 15 14 2 15 5 0
5 60 1 4 1 2 31 0 3 2 1 8 2 1 9 0 0 0 0 0
347 2307761 839 1176560 4741673 2557668 505 2645950 367 3003 666162 173 355 45
<th scope=col>459240</th><th scope=col>426444</th><th scope=col>450333</th><th scope=col>447009</th><th scope=col>399085</th><th scope=col>411630</th><th scope=col>405472</th><th scope=col>438406</th><th scope=col>451281</th><th scope=col>605652</th><th scope=col>⋯</th><th scope=col>430625</th><th scope=col>420344</th><th scope=col>409275</th><th scope=col>428390</th><th scope=col>437341</th><th scope=col>441124</th><th scope=col>426514</th><th scope=col>439112</th><th scope=col>431939</th><th scope=col>446671</th><th scope=row>1</th><th scope=row>12</th><th scope=row>2</th><th scope=row>3</th><th scope=row>4</th><th scope=row>5</th>
23 207 0 34 62 3438 509 4 32 1 27 715 202 225 166 1677 167 7 24 519
1 328 0 29 11 40262053 3 137 0 37 242 579 427 212 2552 37 57 43 253
107 882 0 89 31 108021241 9 197 1 126 1721 869 773 356 5527 328 112 57 1637
6 1108 2 118 11 3800 731 12 74 0 80 376 626 546 464 3387 117 52 98 254
10 1135 0 16 0 915 159 0 21 0 26 75 62 91 52 559 13 6 37 32
4 261 0 22 5 22522463 0 74 2 77 2017 260 408 144 2198 66 33 36 265
x3
t <-(tax_table(x3)) #hago esto porque el melt sobre este objeto phyloseq no trabaja, creo que hay que usar psmelt para esto

write.table(t, "taxvennupset.txt") 
t <- as.data.frame(read.table("taxvennupset.txt", header=T, row.names = 1))

# system("paste vennupset.txt taxvennupset.txt >coreupset.txt")
t1 <- as.data.frame(colSums(otu_table(x3))) #para ordenar x abundancia
# read.table("coreupset.txt", header=T, sep="\t") 
t3 <- merge(t,t1, by=0, all=TRUE )

names(t3)[9] <-"abundance"

t4 <- t3[order(-t3$abundance),]
write.table(t4, "taxvennupset-lineas.txt")
 t5 <-   as.vector(t4$Row.names)
# t5
summary(t4)
phyloseq-class experiment-level object
otu_table()   OTU Table:         [ 1058 taxa and 47 samples ]
sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
tax_table()   Taxonomy Table:    [ 1058 taxa by 7 taxonomic ranks ]
phy_tree()    Phylogenetic Tree: [ 1058 tips and 1056 internal nodes ]



  Row.names                Kingdom                   Phylum   
 Length:1105        k__Bacteria:1058   p__Proteobacteria:355  
 Class :AsIs        NA's       :  47   p__Actinobacteria:210  
 Mode  :character                      p__Firmicutes    :193  
                                       p__Bacteroidetes : 93  
                                       p__Chloroflexi   : 46  
                                       (Other)          :161  
                                       NA's             : 47  
                    Class                    Order    
 c__Actinobacteria     :180   o__Actinomycetales:172  
 c__Gammaproteobacteria:127   o__Clostridiales  : 93  
 c__Alphaproteobacteria:112   o__Bacillales     : 52  
 c__Clostridia         : 98   o__               : 50  
 c__Bacilli            : 84   o__Rhizobiales    : 41  
 (Other)               :457   (Other)           :650  
 NA's                  : 47   NA's              : 47  
                   Family                     Genus     Species       
 f__                  :148   g__                 :363   Mode:logical  
 f__Comamonadaceae    : 22   g__Clostridium      :  3   NA's:1105     
 f__Enterobacteriaceae: 21   g__Amycolatopsis    :  2                 
 f__Veillonellaceae   : 20   g__Cytophaga        :  2                 
 f__Microbacteriaceae : 19   g__Gluconacetobacter:  2                 
 (Other)              :828   (Other)             :686                 
 NA's                 : 47   NA's                : 47                 
   abundance     
 Min.   :  1490  
 1st Qu.: 95376  
 Median :109398  
 Mean   :106046  
 3rd Qu.:124562  
 Max.   :143428  
 NA's   :1058    

https://github.com/joey711/phyloseq/issues/927 Update: I found there are different taxonomic hierarchies for the same genus. I’m a statistician, so I don’t know what this means biologically. For now, I will try to figure out how to manually group the genera, regardless of the higher level taxonomy.

Aquí se explica que el error de tener múltiples géneros después de tax_glom se debe a que un mismo género puede estar clasificado en múltiples lugares (clase, órden, familia, género); como Clostridium…

library(UpSetR)
library(grid)
library(ggplot2)
merge2 = merge_samples(x3, "sample_type")
merge2 <- as.table(t(otu_table(merge2)))
merge2 <- replace(merge2, merge2>0, 1)
write.table(merge2,"merge2.tmp")
merge2 <- read.table("merge2.tmp", header=TRUE, row.names = 1)
head(merge2)
#merge2[order(rowSums(merge2),decreasing=T),] #

upset(merge2, sets = c('Pasamanos', 'Torniquete'), 
      sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on")
Attaching package: ‘UpSetR’

The following object is masked from ‘package:lattice’:

    histogram
<th scope=col>Pasamanos</th><th scope=col>Torniquete</th><th scope=row>459240</th><th scope=row>426444</th><th scope=row>450333</th><th scope=row>447009</th><th scope=row>399085</th><th scope=row>411630</th>
11
11
11
11
11
11

png

#Función para calcular las intersecciones get_intersect_members


get_intersect_members <- function (x, ...){
  require(dplyr)
  require(tibble)
  x <- x[,sapply(x, is.numeric)][,0<=colMeans(x[,sapply(x, is.numeric)],na.rm=T) & colMeans(x[,sapply(x, is.numeric)],na.rm=T)<=1]
  n <- names(x)
  x %>% rownames_to_column() -> x
  l <- c(...)
  a <- intersect(names(x), l)
  ar <- vector('list',length(n)+1)
  ar[[1]] <- x
  i=2
  for (item in n) {
    if (item %in% a){
      if (class(x[[item]])=='integer'){
        ar[[i]] <- paste(item, '>= 1')
        i <- i + 1
      }
    } else {
      if (class(x[[item]])=='integer'){
        ar[[i]] <- paste(item, '== 0')
        i <- i + 1
      }
    }
  }
  do.call(filter_, ar) %>% column_to_rownames() -> x
  return(x)
}
intersect0 <- get_intersect_members(merge2,c('Pasamanos','Torniquete')) #intersección del core, se puede cambiar para cualquier subconjunto de intersecciones!
length(row.names(intersect0)) #número de elementos del core

# row.names(intersect) #identidades del core

intersect1 <- get_intersect_members(merge2,c('Pasamanos')) #ipasamanos Metro
length(row.names(intersect1)) #pasamanos

# row.names(intersect) #pasamanos


intersect2 <- get_intersect_members(merge2,c('Torniquete')) #torniquetes Entrada
length(row.names(intersect2)) #torniquetes

# row.names(intersect) #torniquetes


intersect0 <- (row.names(intersect0)) #identidades del core
vec0 <- setNames(nm=c(intersect0))

intersect1 <- (row.names(intersect1)) #identidades del pasamaos
vec1 <- setNames(nm=c(intersect1))

intersect2 <- (row.names(intersect2)) #identidades del torniquetes
vec2 <- setNames(nm=c(intersect2))

vec <- c(vec0, vec1, vec2)

physeqsubsetOTU <- subset_taxa(x3, rownames(tax_table(x3)) %in% vec)
mergeph1 <- merge_samples(physeqsubsetOTU, "sample_type")
mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
#   wh0 = genefilter_sample(mergeph1, filterfun_sample(function(x) x>0.001))  
#       mergeph1 =prune_taxa(wh0, mergeph1)
head(tax_table(mergeph1))
head(otu_table(mergeph1))
    
  

p <- plot_bar(mergeph1, "Genus")

yx <- p$data
    
    yx <- as.data.frame(yx)
head(yx)
yx <- yx[order(-yx$Abundance),]

head(yx)
levels1=c("Pasamanos","Torniquete")
levels1
levels2 = rev(t5)

yx$orden <- factor(yx$Sample, levels = levels1)
yx$abun <- factor(yx$OTU, levels= levels2)
head(yx$abun)

ggplot(data=yx, aes(x = yx$orden, y= reorder(Genus, Abundance), fill= Abundance))  + 
   geom_raster() + theme_minimal () +
   xlab("") + ylab("") +
   scale_fill_gradient(low="#bebebe", high="#000000", na.value = "white", trans = "log10") +
   theme(axis.text.x = element_text( angle = 90, hjust = 1),
         axis.text.y = element_text(size = 4))

ggsave ("heatmap_core-Metro-Entrada.pdf", width=7, height=85, units="cm")
Warning message:
“filter_() is deprecated. 
Please use filter() instead

The 'programming' vignette or the tidyeval book can help you
to program with filter() : https://tidyeval.tidyverse.org
This warning is displayed once per session.”

885

50

123

<th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=col>Species</th><th scope=row>459240</th><th scope=row>426444</th><th scope=row>450333</th><th scope=row>447009</th><th scope=row>399085</th><th scope=row>411630</th>
k__Bacteria p__Actinobacteria c__Actinobacteria o__Bifidobacteriales f__Bifidobacteriaceaeg__ NA
k__Bacteria p__Actinobacteria c__Actinobacteria o__Bifidobacteriales f__Bifidobacteriaceaeg__Bifidobacterium NA
k__Bacteria p__Actinobacteria c__Actinobacteria o__Bifidobacteriales f__Bifidobacteriaceaeg__Bombiscardovia NA
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Intrasporangiaceaeg__Tetrasphaera NA
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Jonesiaceae g__Jonesia NA
k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Dermabacteraceae g__Brachybacterium NA
<th scope=col>459240</th><th scope=col>426444</th><th scope=col>450333</th><th scope=col>447009</th><th scope=col>399085</th><th scope=col>411630</th><th scope=col>405472</th><th scope=col>438406</th><th scope=col>451281</th><th scope=col>605652</th><th scope=col>⋯</th><th scope=col>430625</th><th scope=col>420344</th><th scope=col>409275</th><th scope=col>428390</th><th scope=col>437341</th><th scope=col>441124</th><th scope=col>426514</th><th scope=col>439112</th><th scope=col>431939</th><th scope=col>446671</th><th scope=row>Pasamanos</th><th scope=row>Torniquete</th>
1.887973e-050.001242989 1.009846e-050.00014225661.887973e-050.006820412 0.002611550 6.146889e-060.00016947851.931879e-050.00010405800.001019066 0.00098657560.00076967830.00054970750.004968881 0.00012513316.629859e-050.00011766900.0003784727
5.357291e-050.001492283 1.108405e-060.00010899326.687377e-050.013704688 0.001763472 2.327650e-050.00025678052.216810e-060.00016256610.001964094 0.00105483210.00127762150.00072969990.008578315 0.00044853451.559156e-040.00038239970.0017634723
<th scope=col>OTU</th><th scope=col>Sample</th><th scope=col>Abundance</th><th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>⋯</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=row>757</th><th scope=row>777</th><th scope=row>778</th><th scope=row>116</th><th scope=row>758</th><th scope=row>115</th>
414180 Pasamanos 0.20447625 28.73913 23.00000 36.0 6.739130 1 3.478261 21.73913 9254.217 14629.63 6.235322 0.9819719 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
416710 Pasamanos 0.15071249 28.73913 23.00000 36.0 6.739130 1 3.478261 21.73913 9254.217 14629.63 6.235322 0.9819719 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
416710 Torniquete 0.10054194 13.50000 12.58333 12.5 6.416667 2 3.625000 20.20833 10525.833 15631.35 6.518897 0.9834128 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
128 Torniquete 0.09209330 13.50000 12.58333 12.5 6.416667 2 3.625000 20.20833 10525.833 15631.35 6.518897 0.9834128 k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Streptococcaceae g__Streptococcus
414180 Torniquete 0.08537304 13.50000 12.58333 12.5 6.416667 2 3.625000 20.20833 10525.833 15631.35 6.518897 0.9834128 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
128 Pasamanos 0.08530345 28.73913 23.00000 36.0 6.739130 1 3.478261 21.73913 9254.217 14629.63 6.235322 0.9819719 k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Streptococcaceae g__Streptococcus
<th scope=col>OTU</th><th scope=col>Sample</th><th scope=col>Abundance</th><th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>⋯</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=row>757</th><th scope=row>777</th><th scope=row>778</th><th scope=row>116</th><th scope=row>758</th><th scope=row>115</th>
414180 Pasamanos 0.20447625 28.73913 23.00000 36.0 6.739130 1 3.478261 21.73913 9254.217 14629.63 6.235322 0.9819719 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
416710 Pasamanos 0.15071249 28.73913 23.00000 36.0 6.739130 1 3.478261 21.73913 9254.217 14629.63 6.235322 0.9819719 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
416710 Torniquete 0.10054194 13.50000 12.58333 12.5 6.416667 2 3.625000 20.20833 10525.833 15631.35 6.518897 0.9834128 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
128 Torniquete 0.09209330 13.50000 12.58333 12.5 6.416667 2 3.625000 20.20833 10525.833 15631.35 6.518897 0.9834128 k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Streptococcaceae g__Streptococcus
414180 Torniquete 0.08537304 13.50000 12.58333 12.5 6.416667 2 3.625000 20.20833 10525.833 15631.35 6.518897 0.9834128 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
128 Pasamanos 0.08530345 28.73913 23.00000 36.0 6.739130 1 3.478261 21.73913 9254.217 14629.63 6.235322 0.9819719 k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Streptococcaceae g__Streptococcus

<ol class=list-inline> <li>‘Pasamanos’</li> <li>‘Torniquete’</li> </ol>

<ol class=list-inline> <li>414180</li> <li>416710</li> <li>416710</li> <li>128</li> <li>414180</li> <li>128</li> </ol>

<summary style=display:list-item;cursor:pointer> Levels: </summary> <ol class=list-inline>
  • '99661'
  • '98939'
  • '98835'
  • '98813'
  • '98774'
  • '98682'
  • '98620'
  • '98611'
  • '98528'
  • '98016'
  • '9775'
  • '9657'
  • '9569'
  • '95405'
  • '95007'
  • '9438'
  • '9274'
  • '92549'
  • '9204'
  • '919'
  • '91847'
  • '91647'
  • '91395'
  • '91028'
  • '90931'
  • '90734'
  • '90683'
  • '90555'
  • '89628'
  • '8945'
  • '89277'
  • '89160'
  • '8896'
  • '88867'
  • '88686'
  • '88189'
  • '87500'
  • '87482'
  • '87204'
  • '87083'
  • '86386'
  • '86054'
  • '85560'
  • '85514'
  • '85359'
  • '85301'
  • '85155'
  • '85'
  • '848'
  • '8477'
  • '84562'
  • '83285'
  • '82517'
  • '8251'
  • '82039'
  • '81484'
  • '8146'
  • '81220'
  • '8114'
  • '80964'
  • '8054'
  • '8039'
  • '80183'
  • '7998'
  • '79148'
  • '78491'
  • '78409'
  • '784'
  • '783'
  • '78171'
  • '78052'
  • '77951'
  • '77857'
  • '7785'
  • '77656'
  • '77453'
  • '7743'
  • '7729'
  • '77265'
  • '76984'
  • '769'
  • '76876'
  • '76544'
  • '7642'
  • '76418'
  • '76246'
  • '75345'
  • '7516'
  • '75115'
  • '75024'
  • '7439'
  • '73893'
  • '7312'
  • '72400'
  • '72177'
  • '71838'
  • '71519'
  • '7064'
  • '69324'
  • '69068'
  • '6905'
  • '6802'
  • '6771'
  • '668751'
  • '665901'
  • '665780'
  • '6654'
  • '66403'
  • '663304'
  • '662809'
  • '662086'
  • '661532'
  • '660830'
  • '659855'
  • '659470'
  • '659443'
  • '659408'
  • '659332'
  • '659014'
  • '658994'
  • '658768'
  • '658454'
  • '656173'
  • '653080'
  • '650729'
  • '650558'
  • '650439'
  • '648'
  • '645454'
  • '645092'
  • '642523'
  • '641945'
  • '641941'
  • '641272'
  • '639307'
  • '638463'
  • '638299'
  • '635427'
  • '634717'
  • '634278'
  • '634196'
  • '633903'
  • '630637'
  • '630575'
  • '630410'
  • '63'
  • '629598'
  • '629382'
  • '629216'
  • '629097'
  • '628983'
  • '628631'
  • '628593'
  • '627806'
  • '627644'
  • '627381'
  • '627223'
  • '626841'
  • '626785'
  • '626253'
  • '626088'
  • '625730'
  • '625698'
  • '625268'
  • '625210'
  • '625012'
  • '624996'
  • '624929'
  • '624926'
  • '624788'
  • '624015'
  • '623869'
  • '622911'
  • '622850'
  • '622846'
  • '622808'
  • '622786'
  • '621816'
  • '621773'
  • '621633'
  • '621452'
  • '621266'
  • '621046'
  • '620774'
  • '620665'
  • '620522'
  • '620484'
  • '620328'
  • '620297'
  • '620249'
  • '620164'
  • '619366'
  • '619239'
  • '619233'
  • '619182'
  • '619134'
  • '618809'
  • '618776'
  • '618698'
  • '618475'
  • '618457'
  • '618285'
  • '618195'
  • '617843'
  • '617692'
  • '617690'
  • '617688'
  • '617413'
  • '616962'
  • '616902'
  • '616604'
  • '616589'
  • '616457'
  • '616224'
  • '616178'
  • '616177'
  • '615865'
  • '615429'
  • '615416'
  • '615312'
  • '615110'
  • '615078'
  • '614788'
  • '614743'
  • '614591'
  • '614531'
  • '614518'
  • '614514'
  • '614508'
  • '614149'
  • '614129'
  • '613990'
  • '613904'
  • '613884'
  • '613383'
  • '613265'
  • '613047'
  • '613011'
  • '612991'
  • '612673'
  • '612649'
  • '612601'
  • '612583'
  • '612474'
  • '612431'
  • '612408'
  • '612304'
  • '612289'
  • '612115'
  • '611884'
  • '611860'
  • '611832'
  • '611811'
  • '611587'
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  • </ol>
    Warning message:
    “Transformation introduced infinite values in discrete y-axis”Warning message:
    “Transformation introduced infinite values in discrete y-axis”
    

    png

    vec <- c(vec0, vec1, vec2) #todos
    # vec <- c(vec0) #solo core
    physeqsubsetOTU <- subset_taxa(x3, rownames(tax_table(x3)) %in% vec)
    mergeph1 <- merge_samples(physeqsubsetOTU, "sample_type")
    mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
          write.table(t(otu_table(mergeph1)),"heatmap_core-Metro-Entrada.csv",sep="\t")
         write.table(tax_table(mergeph1),"heatmap_core-Metro-Entrada.tax.csv",sep="\t")
        #Correción a valores vacios en Género 
        
        ylabvec = as(tax_table(mergeph1)[,"Genus"], "character")
    names(ylabvec) <- taxa_names(mergeph1)
    ylabvec[is.na(ylabvec)] <- ""
        
        #####
        
    
        t1 <- as.data.frame(colSums(otu_table(mergeph1))) #para ordenar x abundancia
    
    # write.table(t, "vennupset.txt") 
    t <-(tax_table(mergeph1)) #hago esto porque el melt sobre este objeto phyloseq no trabaja, creo que hay que usar psmelt para esto
    
    write.table(t, "taxvennupset.txt") 
    t <- as.data.frame(read.table("taxvennupset.txt", header=T, row.names = 1))
    
    # system("paste vennupset.txt taxvennupset.txt >coreupset.txt")
    
    # read.table("coreupset.txt", header=T, sep="\t") 
    t3 <- merge(t,t1, by=0, all=TRUE )
    
    names(t3)[9] <-"abundance"
    
    t4 <- t3[order(-t3$abundance),]
    write.table(t4, "taxvennupset-lineas.txt")
     t5 <-   as.vector(t4$Row.names)
    # t5
    summary(t4)
    
        
        plot_heatmap(mergeph1, "bray", taxa.order=rev(t5)) + scale_y_discrete(labels=ylabvec)  + theme_minimal () +
       scale_fill_gradient(low="#F1E8FA", high="#FA7500", na.value = "white", trans = "log10")  +
       theme(axis.text.x = element_text( angle = 90, hjust = 1),
             axis.text.y = element_text(size = 2.5))
        
        ggsave ("heatmap_core-Metro-Entrada.pdf", width=10, height=110, units="cm")
    
      Row.names                Kingdom                   Phylum   
     Length:1058        k__Bacteria:1058   p__Proteobacteria:355  
     Class :AsIs                           p__Actinobacteria:210  
     Mode  :character                      p__Firmicutes    :193  
                                           p__Bacteroidetes : 93  
                                           p__Chloroflexi   : 46  
                                           p__Cyanobacteria : 22  
                                           (Other)          :139  
                        Class                    Order    
     c__Actinobacteria     :180   o__Actinomycetales:172  
     c__Gammaproteobacteria:127   o__Clostridiales  : 93  
     c__Alphaproteobacteria:112   o__Bacillales     : 52  
     c__Clostridia         : 98   o__               : 50  
     c__Bacilli            : 84   o__Rhizobiales    : 41  
     c__Betaproteobacteria : 76   o__Burkholderiales: 40  
     (Other)               :381   (Other)           :610  
                       Family                     Genus     Species       
     f__                  :148   g__                 :363   Mode:logical  
     f__Comamonadaceae    : 22   g__Clostridium      :  3   NA's:1058     
     f__Enterobacteriaceae: 21   g__Amycolatopsis    :  2                 
     f__Veillonellaceae   : 20   g__Cytophaga        :  2                 
     f__Microbacteriaceae : 19   g__Gluconacetobacter:  2                 
     f__Lachnospiraceae   : 16   g__Gordonia         :  2                 
     (Other)              :812   (Other)             :684                 
       abundance        
     Min.   :1.850e-06  
     1st Qu.:7.840e-06  
     Median :3.840e-05  
     Mean   :1.890e-03  
     3rd Qu.:3.004e-04  
     Max.   :2.898e-01  
                        
    
    
    Warning message in plot_heatmap(mergeph1, "bray", taxa.order = rev(t5)):
    “Attempt to access ordination coordinates for sample ordering failed.
    Using default sample ordering.”Scale for 'y' is already present. Adding another scale for 'y', which will
    replace the existing scale.
    Scale for 'fill' is already present. Adding another scale for 'fill', which
    will replace the existing scale.
    Warning message:
    “Transformation introduced infinite values in discrete y-axis”Warning message:
    “Transformation introduced infinite values in discrete y-axis”
    

    png

    t1 <- as.data.frame(colSums(otu_table(mergeph1)))
    
    # write.table(t, "vennupset.txt") 
    t <-(tax_table(mergeph1)) #hago esto porque el melt sobre este objeto phyloseq no trabaja, creo que hay que usar psmelt para esto
    
    write.table(t, "taxvennupset.txt") 
    t <- as.data.frame(read.table("taxvennupset.txt", header=T, row.names = 1))
    
    # system("paste vennupset.txt taxvennupset.txt >coreupset.txt")
    
    # read.table("coreupset.txt", header=T, sep="\t") 
    t3 <- merge(t,t1, by=0, all=TRUE )
    
    names(t3)[9] <-"abundance"
    
    t4 <- t3[order(-t3$abundance),]
    write.table(t4, "taxvennupset-Entrada-Salida.txt")
     t5 <-   as.vector(t4$Row.names)
    t5
    t4
    summary(t4)
    

    <ol class=list-inline> <li>‘414180’</li> <li>‘416710’</li> <li>‘128’</li> <li>‘196’</li> <li>‘577669’</li> <li>‘406268’</li> <li>‘16’</li> <li>‘198’</li> <li>‘429324’</li> <li>‘106592’</li> <li>‘407005’</li> <li>‘423705’</li> <li>‘2752’</li> <li>‘363378’</li> <li>‘411630’</li> <li>‘407471’</li> <li>‘919’</li> <li>‘2872’</li> <li>‘441149’</li> <li>‘237’</li> <li>‘5842’</li> <li>‘448273’</li> <li>‘441124’</li> <li>‘405577’</li> <li>‘431705’</li> <li>‘621816’</li> <li>‘4011’</li> <li>‘1567’</li> <li>‘581015’</li> <li>‘536’</li> <li>‘3713’</li> <li>‘6905’</li> <li>‘487684’</li> <li>‘332’</li> <li>‘594606’</li> <li>‘0’</li> <li>‘401629’</li> <li>‘7743’</li> <li>‘5610’</li> <li>‘415588’</li> <li>‘2’</li> <li>‘447167’</li> <li>‘55238’</li> <li>‘418998’</li> <li>‘464306’</li> <li>‘5363’</li> <li>‘597541’</li> <li>‘417274’</li> <li>‘85’</li> <li>‘7642’</li> <li>‘526192’</li> <li>‘436075’</li> <li>‘618776’</li> <li>‘16922’</li> <li>‘5405’</li> <li>‘365341’</li> <li>‘613011’</li> <li>‘48372’</li> <li>‘4427’</li> <li>‘405472’</li> <li>‘447452’</li> <li>‘609633’</li> <li>‘405883’</li> <li>‘1391’</li> <li>‘1302’</li> <li>‘1891’</li> <li>‘6802’</li> <li>‘424461’</li> <li>‘374772’</li> <li>‘363484’</li> <li>‘613047’</li> <li>‘5137’</li> <li>‘7312’</li> <li>‘416077’</li> <li>‘9569’</li> <li>‘426444’</li> <li>‘420344’</li> <li>‘363726’</li> <li>‘619366’</li> <li>‘270’</li> <li>‘318’</li> <li>‘201’</li> <li>‘420264’</li> <li>‘848’</li> <li>‘363489’</li> <li>‘609729’</li> <li>‘407618’</li> <li>‘430883’</li> <li>‘436581’</li> <li>‘431267’</li> <li>‘609800’</li> <li>‘7516’</li> <li>‘1768’</li> <li>‘12383’</li> <li>‘88867’</li> <li>‘433202’</li> <li>‘5848’</li> <li>‘459305’</li> <li>‘427741’</li> <li>‘783’</li> <li>‘586158’</li> <li>‘610992’</li> <li>‘582162’</li> <li>‘436034’</li> <li>‘423061’</li> <li>‘610501’</li> <li>‘609840’</li> <li>‘440949’</li> <li>‘446671’</li> <li>‘428390’</li> <li>‘409275’</li> <li>‘609777’</li> <li>‘448507’</li> <li>‘431910’</li> <li>‘15009’</li> <li>‘586284’</li> <li>‘658768’</li> <li>‘431472’</li> <li>‘603515’</li> <li>‘12074’</li> <li>‘406908’</li> <li>‘8896’</li> <li>‘364283’</li> <li>‘435657’</li> <li>‘10386’</li> <li>‘7998’</li> <li>‘2182’</li> <li>‘610051’</li> <li>‘18551’</li> <li>‘6654’</li> <li>‘447628’</li> <li>‘471778’</li> <li>‘437341’</li> <li>‘610168’</li> <li>‘648’</li> <li>‘363540’</li> <li>‘609698’</li> <li>‘597451’</li> <li>‘426939’</li> <li>‘13662’</li> <li>‘609978’</li> <li>‘12146’</li> <li>‘410092’</li> <li>‘24575’</li> <li>‘18766’</li> <li>‘424742’</li> <li>‘12166’</li> <li>‘5482’</li> <li>‘444195’</li> <li>‘446598’</li> <li>‘9204’</li> <li>‘21753’</li> <li>‘7729’</li> <li>‘595433’</li> <li>‘610684’</li> <li>‘426696’</li> <li>‘27858’</li> <li>‘14252’</li> <li>‘110225’</li> <li>‘420579’</li> <li>‘609632’</li> <li>‘611582’</li> <li>‘611480’</li> <li>‘435636’</li> <li>‘769’</li> <li>‘12211’</li> <li>‘15639’</li> <li>‘397576’</li> <li>‘611811’</li> <li>‘616224’</li> <li>‘612991’</li> <li>‘428135’</li> <li>‘10161’</li> <li>‘609876’</li> <li>‘608894’</li> <li>‘428344’</li> <li>‘420377’</li> <li>‘609983’</li> <li>‘586417’</li> <li>‘449468’</li> <li>‘448725’</li> <li>‘25268’</li> <li>‘434933’</li> <li>‘583880’</li> <li>‘610457’</li> <li>‘610907’</li> <li>‘595047’</li> <li>‘9657’</li> <li>‘363834’</li> <li>‘420245’</li> <li>‘427270’</li> <li>‘375356’</li> <li>‘448932’</li> <li>‘611331’</li> <li>‘396712’</li> <li>‘624015’</li> <li>‘18949’</li> <li>‘597358’</li> <li>‘589958’</li> <li>‘448617’</li> <li>‘426514’</li> <li>‘20050’</li> <li>‘109653’</li> <li>‘431939’</li> <li>‘8945’</li> <li>‘19641’</li> <li>‘24681’</li> <li>‘610022’</li> <li>‘612115’</li> <li>‘377715’</li> <li>‘14443’</li> <li>‘359872’</li> <li>‘612673’</li> <li>‘410759’</li> <li>‘610126’</li> <li>‘365025’</li> <li>‘435200’</li> <li>‘412648’</li> <li>‘587246’</li> <li>‘610982’</li> <li>‘614508’</li> <li>‘365019’</li> <li>‘363774’</li> <li>‘442773’</li> <li>‘113020’</li> <li>‘19866’</li> <li>‘38948’</li> <li>‘53099’</li> <li>‘617413’</li> <li>‘611161’</li> <li>‘451281’</li> <li>‘363483’</li> <li>‘612474’</li> <li>‘610781’</li> <li>‘610936’</li> <li>‘416337’</li> <li>‘364240’</li> <li>‘586656’</li> <li>‘23690’</li> <li>‘406147’</li> <li>‘610449’</li> <li>‘370945’</li> <li>‘51013’</li> <li>‘16589’</li> <li>‘626785’</li> <li>‘609766’</li> <li>‘69324’</li> <li>‘55469’</li> <li>‘449445’</li> <li>‘80183’</li> <li>‘366092’</li> <li>‘86054’</li> <li>‘375033’</li> <li>‘610839’</li> <li>‘610912’</li> <li>‘6067’</li> <li>‘411759’</li> <li>‘35775’</li> <li>‘26840’</li> <li>‘614149’</li> <li>‘369946’</li> <li>‘610478’</li> <li>‘614514’</li> <li>‘615312’</li> <li>‘611559’</li> <li>‘156955’</li> <li>‘372548’</li> <li>‘50867’</li> <li>‘447987’</li> <li>‘430625’</li> <li>‘449755’</li> <li>‘413470’</li> <li>‘12220’</li> <li>‘461352’</li> <li>‘619233’</li> <li>‘594161’</li> <li>‘2705’</li> <li>‘593922’</li> <li>‘597454’</li> <li>‘280929’</li> <li>‘452363’</li> <li>‘597412’</li> <li>‘610017’</li> <li>‘405422’</li> <li>‘447009’</li> <li>‘659443’</li> <li>‘471947’</li> <li>‘405576’</li> <li>‘589148’</li> <li>‘601221’</li> <li>‘430978’</li> <li>‘12259’</li> <li>‘12136’</li> <li>‘34865’</li> <li>‘439112’</li> <li>‘18480’</li> <li>‘459088’</li> <li>‘334273’</li> <li>‘39298’</li> <li>‘613990’</li> <li>‘410289’</li> <li>‘616178’</li> <li>‘476037’</li> <li>‘9274’</li> <li>‘578858’</li> <li>‘610360’</li> <li>‘13889’</li> <li>‘610678’</li> <li>‘405302’</li> <li>‘12175’</li> <li>‘32085’</li> <li>‘415522’</li> <li>‘627644’</li> <li>‘416139’</li> <li>‘437767’</li> <li>‘136919’</li> <li>‘363813’</li> <li>‘377133’</li> <li>‘54893’</li> <li>‘423843’</li> <li>‘13555’</li> <li>‘472018’</li> <li>‘414321’</li> <li>‘12984’</li> <li>‘629598’</li> <li>‘612601’</li> <li>‘446745’</li> <li>‘436120’</li> <li>‘411873’</li> <li>‘377163’</li> <li>‘450257’</li> <li>‘430059’</li> <li>‘427333’</li> <li>‘444177’</li> <li>‘586387’</li> <li>‘109709’</li> <li>‘610692’</li> <li>‘586605’</li> <li>‘23774’</li> <li>‘593844’</li> <li>‘444440’</li> <li>‘20375’</li> <li>‘73893’</li> <li>‘434515’</li> <li>‘479578’</li> <li>‘431739’</li> <li>‘588929’</li> <li>‘606122’</li> <li>‘460367’</li> <li>‘650729’</li> <li>‘460219’</li> <li>‘36600’</li> <li>‘373535’</li> <li>‘427399’</li> <li>‘368076’</li> <li>‘451699’</li> <li>‘36570’</li> <li>‘41606’</li> <li>‘76544’</li> <li>‘37102’</li> <li>‘439293’</li> <li>‘593979’</li> <li>‘615416’</li> <li>‘550’</li> <li>‘612289’</li> <li>‘626088’</li> <li>‘19322’</li> <li>‘57194’</li> <li>‘2337’</li> <li>‘620328’</li> <li>‘585808’</li> <li>‘8114’</li> <li>‘136738’</li> <li>‘425992’</li> <li>‘455404’</li> <li>‘91647’</li> <li>‘87083’</li> <li>‘593763’</li> <li>‘26815’</li> <li>‘610497’</li> <li>‘408512’</li> <li>‘458189’</li> <li>‘1599’</li> <li>‘460542’</li> <li>‘611884’</li> <li>‘431070’</li> <li>‘577937’</li> <li>‘459148’</li> <li>‘7064’</li> <li>‘41078’</li> <li>‘89160’</li> <li>‘76246’</li> <li>‘593853’</li> <li>‘402285’</li> <li>‘66403’</li> <li>‘585576’</li> <li>‘417779’</li> <li>‘77951’</li> <li>‘624788’</li> <li>‘26519’</li> <li>‘447181’</li> <li>‘84562’</li> <li>‘142721’</li> <li>‘659408’</li> <li>‘7439’</li> <li>‘365105’</li> <li>‘618698’</li> <li>‘462943’</li> <li>‘411540’</li> <li>‘658994’</li> <li>‘451667’</li> <li>‘78052’</li> <li>‘370906’</li> <li>‘477237’</li> <li>‘448656’</li> <li>‘463727’</li> <li>‘136800’</li> <li>‘437958’</li> <li>‘421538’</li> <li>‘471867’</li> </ol>

    <th scope=col>Row.names</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=col>Species</th><th scope=col>abundance</th><th scope=row>142</th><th scope=row>150</th><th scope=row>18</th><th scope=row>46</th><th scope=row>271</th><th scope=row>125</th><th scope=row>36</th><th scope=row>48</th><th scope=row>177</th><th scope=row>4</th><th scope=row>127</th><th scope=row>161</th><th scope=row>68</th><th scope=row>79</th><th scope=row>137</th><th scope=row>128</th><th scope=row>416</th><th scope=row>71</th><th scope=row>206</th><th scope=row>58</th><th scope=row>277</th><th scope=row>221</th><th scope=row>205</th><th scope=row>122</th><th scope=row>185</th><th scope=row>371</th><th scope=row>115</th><th scope=row>33</th><th scope=row>274</th><th scope=row>261</th><th scope=row>⋮</th><th scope=row>413</th><th scope=row>394</th><th scope=row>293</th><th scope=row>117</th><th scope=row>384</th><th scope=row>279</th><th scope=row>152</th><th scope=row>400</th><th scope=row>373</th><th scope=row>63</th><th scope=row>217</th><th scope=row>406</th><th scope=row>29</th><th scope=row>382</th><th scope=row>392</th><th scope=row>92</th><th scope=row>366</th><th scope=row>244</th><th scope=row>136</th><th scope=row>381</th><th scope=row>232</th><th scope=row>401</th><th scope=row>99</th><th scope=row>252</th><th scope=row>224</th><th scope=row>245</th><th scope=row>24</th><th scope=row>201</th><th scope=row>159</th><th scope=row>248</th>
    414180 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium NA 1.78149607
    416710 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium NA 1.53275566
    128 k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Streptococcaceae g__Streptococcus NA 1.06370483
    196 k__Bacteria p__Firmicutes c__Bacilli o__Bacillales f__Staphylococcaceae g__Staphylococcus NA 0.62229151
    577669 k__Bacteria p__Cyanobacteria c__Chloroplast o__Streptophyta f__ g__ NA 0.44408853
    406268 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Micrococcaceae g__ NA 0.38711507
    16 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pseudomonadales f__Moraxellaceae g__Acinetobacter NA 0.35217439
    198 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Oceanospirillales f__Halomonadaceae g__Halomonas NA 0.31591501
    429324 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Micrococcaceae g__Rothia NA 0.28329129
    106592 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Actinomycetaceae g__Actinomyces NA 0.21174119
    407005 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Micrococcaceae g__Kocuria NA 0.15668163
    423705 k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhizobiales f__Methylobacteriaceae g__Methylobacterium NA 0.14168781
    2752 k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Leuconostocaceae g__Leuconostoc NA 0.13169804
    363378 k__Bacteria p__Bacteroidetes c__Bacteroidia o__Bacteroidales f__Prevotellaceae g__Prevotella NA 0.13097123
    411630 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Dermabacteraceae g__Brachybacterium NA 0.12410558
    407471 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__ g__ NA 0.11979894
    919 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pseudomonadales f__Pseudomonadaceae g__Pseudomonas NA 0.11591437
    2872 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Veillonellaceae g__Veillonella NA 0.10776000
    441149 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Nocardioidaceae g__ NA 0.10723726
    237 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Alteromonadales f__Shewanellaceae g__Shewanella NA 0.10335421
    5842 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Enterobacteriales f__Enterobacteriaceae g__ NA 0.09047803
    448273 k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodobacterales f__Rhodobacteraceae g__Paracoccus NA 0.08866707
    441124 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Intrasporangiaceae g__ NA 0.08285365
    405577 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Micrococcaceae g__Arthrobacter NA 0.08187161
    431705 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Micrococcaceae g__Micrococcus NA 0.07791757
    621816 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__[Tissierellaceae] g__Anaerococcus NA 0.07168884
    4011 k__Bacteria p__Firmicutes c__Bacilli o__Bacillales f__Planococcaceae g__ NA 0.07021657
    1567 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pasteurellales f__Pasteurellaceae g__Haemophilus NA 0.06653305
    581015 k__Bacteria p__Chloroflexi c__Thermomicrobia o__JG30-KF-CM45 f__ g__ NA 0.06369878
    536 k__Bacteria p__Firmicutes c__Bacilli o__Lactobacillales f__Streptococcaceae g__Lactococcus NA 0.06244342
    89160 k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Alcaligenaceae g__ NA 0.0003895338
    76246 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__Pseudomonadales f__Moraxellaceae g__Perlucidibaca NA 0.0003870954
    593853 k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__mitochondria g__Carludovica NA 0.0003683671
    402285 k__Bacteria p__Bacteroidetes c__[Rhodothermi] o__[Rhodothermales] f__Rhodothermaceae g__Rubricoccus NA 0.0003658528
    66403 k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Delftia NA 0.0003646956
    585576 k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__mitochondria g__Lupinus NA 0.0003622692
    417779 k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__mitochondria g__Citrullus NA 0.0003420994
    77951 k__Bacteria p__Proteobacteria c__Gammaproteobacteria o__ f__ g__ NA 0.0003389174
    624788 k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__ f__ g__ NA 0.0003382937
    26519 k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Rhodoferax NA 0.0003270282
    447181 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Actinosynnemataceae g__Actinokineospora NA 0.0003259827
    84562 k__Bacteria p__Proteobacteria c__Betaproteobacteria o__ASSO-13 f__ g__ NA 0.0003219837
    142721 k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Comamonadaceae g__Limnohabitans NA 0.0003148925
    659408 k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rickettsiales f__mitochondria g__Carica NA 0.0003088067
    7439 k__Bacteria p__Proteobacteria c__Betaproteobacteria o__Burkholderiales f__Alcaligenaceae g__Achromobacter NA 0.0002941490
    365105 k__Bacteria p__Bacteroidetes c__Flavobacteriia o__Flavobacteriales f__Flavobacteriaceae g__Salinimicrobium NA 0.0002711125
    618698 k__Bacteria p__Proteobacteria c__Alphaproteobacteria o__Rhodospirillales f__Acetobacteraceae g__Roseococcus NA 0.0002682362
    462943 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Microbacteriaceae g__Clavibacter NA 0.0002663574
    411540 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Micrococcaceae g__Renibacterium NA 0.0002620201
    658994 k__Bacteria p__Firmicutes c__Clostridia o__Clostridiales f__Clostridiaceae g__SMB53 NA 0.0002602734
    451667 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Promicromonosporaceaeg__Luteimicrobium NA 0.0002588891
    78052 k__Bacteria p__Firmicutes c__Bacilli o__Bacillales f__Planococcaceae g__Paenisporosarcina NA 0.0002431758
    370906 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Nocardiopsaceae g__ NA 0.0002331379
    477237 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Intrasporangiaceae g__Intrasporangium NA 0.0002230777
    448656 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Micromonosporaceae g__Pilimelia NA 0.0002221398
    463727 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Microbacteriaceae g__Herbiconiux NA 0.0002101281
    136800 k__Bacteria p__Firmicutes c__Bacilli o__Bacillales f__Planococcaceae g__Viridibacillus NA 0.0001925363
    437958 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Pseudonocardiaceae g__Jiangella NA 0.0001459043
    421538 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Microbacteriaceae g__Curtobacterium NA 0.0001428974
    471867 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Microbacteriaceae g__Yonghaparkia NA 0.0001223003
      Row.names                Kingdom                  Phylum   
     Length:420         k__Bacteria:420   p__Actinobacteria:134  
     Class :AsIs                          p__Proteobacteria:127  
     Mode  :character                     p__Firmicutes    :100  
                                          p__Bacteroidetes : 27  
                                          p__TM7           :  7  
                                          p__Chloroflexi   :  4  
                                          (Other)          : 21  
                        Class                    Order    
     c__Actinobacteria     :121   o__Actinomycetales:118  
     c__Bacilli            : 52   o__Clostridiales  : 44  
     c__Alphaproteobacteria: 50   o__Bacillales     : 25  
     c__Gammaproteobacteria: 47   o__Lactobacillales: 23  
     c__Clostridia         : 45   o__Burkholderiales: 18  
     c__Betaproteobacteria : 27   o__Rhizobiales    : 16  
     (Other)               : 78   (Other)           :176  
                       Family                  Genus     Species       
     f__                  : 36   g__              :129   Mode:logical  
     f__Microbacteriaceae : 14   g__Staphylococcus:  2   NA's:420      
     f__Intrasporangiaceae: 12   g__Vibrio        :  2                 
     f__Enterobacteriaceae: 11   g__1-68          :  1                 
     f__Lachnospiraceae   : 11   g__Acaricomes    :  1                 
     f__Planococcaceae    : 11   g__Acetobacter   :  1                 
     (Other)              :325   (Other)          :284                 
       abundance        
     Min.   :0.0001223  
     1st Qu.:0.0010293  
     Median :0.0030337  
     Mean   :0.0285714  
     3rd Qu.:0.0130645  
     Max.   :1.7814961  
    
    merge2 = merge_samples(x3, "line_number")
    merge2 <- as.table(t(otu_table(merge2)))
    merge2 <- replace(merge2, merge2>0, 1)
    write.table(merge2,"merge2.tmp")
    
    merge2 <- read.table("merge2.tmp", header=TRUE, row.names = 1)
    head(merge2)
    #merge2[order(rowSums(merge2),decreasing=T),] #
    upset(merge2, sets = c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12'), 
          sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on")
    
    
    upset(merge2, sets = c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12'), 
          sets.bar.color = "#56B4E9", order.by = "freq", empty.intersections = "on")
    ggsave("upset_lines.pdf", width= 10, height= 10, onefile=FALSE)
    
    <th scope=col>X1</th><th scope=col>X12</th><th scope=col>X2</th><th scope=col>X3</th><th scope=col>X4</th><th scope=col>X5</th><th scope=col>X6</th><th scope=col>X7</th><th scope=col>X8</th><th scope=col>X9</th><th scope=col>A</th><th scope=col>B</th><th scope=row>459240</th><th scope=row>426444</th><th scope=row>450333</th><th scope=row>447009</th><th scope=row>399085</th><th scope=row>411630</th>
    111111111101
    111111111111
    000100011000
    111111111111
    111101111111
    111111111111

    png

    png

    intersect <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12')) #intersección del core, se puede cambiar para cualquier subconjunto de intersecciones!
    length(row.names(intersect)) #número de elementos del core
    
    intersect <- (row.names(intersect)) #identidades del core
    vec <- setNames(nm=c(intersect))
    # vec
    
    
    Warning message:
    “filter_() is deprecated. 
    Please use filter() instead
    
    The 'programming' vignette or the tidyeval book can help you
    to program with filter() : https://tidyeval.tidyverse.org
    This warning is displayed once per session.”
    

    420

    #  ya se soluciono arriba lo de este vector por setNAMES
    # tmp <- c('426444', '447009', '411630', '405472', '451281', '448656', '435636', '436120', '414321', '442773', '431472', '396712', '447181', '436034', '433202', '471947', '450257', '444440', '444177', '459088', '420579', '447452', '424461', '447167', '408512', '431910', '415588', '426939', '441149', '448507', '416077', '405576', '448932', '449755', '410092', '452363', '435200', '460367', '586417', '425992', '373535', '370906', '21753', '26815', '14443', '109653', '769', '616178', '84562', '20375', '16', '624788', '91647', '16589', '16922', '6905', '550', '80183', '41078', '2182', '20050', '9569', '7729', '7439', '41606', '89160', '36570', '18766', '142721', '9274', '15009', '54893', '66403', '26519', '76544', '37102', '86054', '198', '10161', '7312', '38948', '7064', '136738', '76246', '19641', '5137', '10386', '85', '1391', '783', '919', '3713', '1891', '270', '87083', '5842', '5848', '12146', '73893', '6802', '19322', '12259', '237', '23774', '39298', '50867', '6067', '12175', '57194', '26840', '136919', '612673', '609729', '613990', '618698', '615312', '610992', '608894', '603515', '611559', '610839', '610678', '610449', '459305', '610360', '610457', '611884', '609983', '610907', '611582', '609698', '611161', '13662', '18949', '410289', '418998', '624015', '613047', '658994', '619366', '586284', '593979', '586656', '593922', '618776', '610478', '621816', '487684', '472018', '460219', '461352', '609840', '609800', '610781', '586387', '583880', '658768', '610982', '595047', '609632', '595433', '610936', '1599', '12984', '610126', '626785', '610022', '597412', '431267', '577669', '416139', '405302', '434515', '619233', '581015', '606122', '593844', '364240', '363774', '365019', '369946', '365105', '372548', '365025', '363726', '363834', '363483', '363489', '363484', '365341', '363378', '366092', '370945', '364283', '377163', '377133', '375033', '375356', '363540', '359872', '368076', '363813', '55238', '402285', '629598', '610692', '589958', '588929', '586158', '601221', '593763', '589148', '597454', '587246', '377715', '659443', '616224', '626088', '627644', '610051', '650729', '14252', '9204', '2872', '280929', '13555', '69324', '13889', '334273', '2752', '136800', '23690', '51013', '19866', '12136', '18480', '12074', '24575', '12220', '5610', '12166', '6654', '24681', '36600', '2', '88867', '156955', '4427', '32085', '9657', '113020', '8114', '48372', '12383', '7642', '5405', '332', '848', '536', '128', '201', '35775', '2337', '1302', '7743', '5363', '8896', '0', '53099', '611480', '423705', '610168', '585576', '577937', '417779', '659408', '444195', '593853', '420377', '582162', '455404', '448273', '594606', '77951', '615416', '612601', '620328', '609978', '612115', '610684', '610501', '609766', '612289', '25268', '7516', '55469', '5482', '648', '2705', '610017', '78052', '614514', '578858', '464306', '526192', '34865', '109709', '110225', '597451', '586605', '597358', '610497', '594161', '471778', '435657', '424742', '397576', '427270', '446745', '423843', '451667', '448725', '449445', '436075', '428135', '427333', '479578', '428344', '471867', '462943', '427399', '407618', '411759', '476037', '448617', '406908', '459148', '411873', '460542', '463727', '421538', '451699', '447987', '447628', '410759', '417274', '412648', '106592', '374772', '405422', '413470', '427741', '406147', '18551', '27858', '611811', '614508', '617413', '614149', '15639', '7998', '8945', '1567', '430059', '437767', '426696', '430978', '431070', '449468', '411540', '437958', '406268', '415522', '431705', '613011', '4011', '12211', '196', '1768', '612991', '612474', '609876', '585808', '610912', '611331', '609777', '431739', '416337', '405577', '420245', '407471', '401629', '436581', '430883', '597541', '609633', '318', '416710', '407005', '423061', '429324', '477237', '405883', '434933', '414180', '446598', '458189', '440949', '439293', '420264', '430625', '420344', '409275', '428390', '437341', '441124', '426514', '439112', '431939', '446671')
    
    physeqsubsetOTU <- subset_taxa(x3, rownames(tax_table(x3)) %in% vec)
    mergeph1 <- merge_samples(physeqsubsetOTU, "line_number")
    #     write.table(t(otu_table(mergeph1)),"heatmap_core-GENUS-LINEs.csv",sep="\t")
    #      write.table(tax_table(mergeph1),"heatmap_core-GENUS-LINEStax.csv",sep="\t")
    ##CACA
    
    mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
    #   wh0 = genefilter_sample(mergeph1, filterfun_sample(function(x) x>0.001))  
    #       mergeph1 =prune_taxa(wh0, mergeph1)
    head(tax_table(mergeph1))
    head(otu_table(mergeph1))
    
    p <- plot_bar(mergeph1, "Genus")
    
    yx <- p$data
          
    ggplot(data=as.data.frame(yx), aes(x = Sample, y= Genus, fill= Abundance))  +
       geom_raster() + theme_minimal () +
       xlab("") + ylab("") +
       scale_fill_gradient(low="#bebebe", high="#000000", na.value = "white", trans = "log2") +
       theme(axis.text.x = element_text(angle = 90, hjust = 1),
             axis.text.y = element_text(size = 5))
          
          head(yx)
          
    ggplot(data=as.data.frame(yx), aes(x = Sample, y= Genus, fill= Abundance))  +
       geom_raster() + theme_minimal () +
       xlab("") + ylab("") +
       scale_fill_gradient(low="#bebebe", high="#000000", na.value = "white", trans = "log2") +
       theme(axis.text.x = element_text(angle = 90, hjust = 1),
             axis.text.y = element_text(size = 5))
          
          head(yx)
    
    <th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=col>Species</th><th scope=row>426444</th><th scope=row>447009</th><th scope=row>411630</th><th scope=row>405472</th><th scope=row>451281</th><th scope=row>448656</th>
    k__Bacteria p__Actinobacteria c__Actinobacteria o__Bifidobacteriales f__Bifidobacteriaceaeg__Bifidobacterium NA
    k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Intrasporangiaceaeg__Tetrasphaera NA
    k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Dermabacteraceae g__Brachybacterium NA
    k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Dermacoccaceae g__Dermacoccus NA
    k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Streptomycetaceae g__ NA
    k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Micromonosporaceaeg__Pilimelia NA
    <th scope=col>426444</th><th scope=col>447009</th><th scope=col>411630</th><th scope=col>405472</th><th scope=col>451281</th><th scope=col>448656</th><th scope=col>435636</th><th scope=col>436120</th><th scope=col>414321</th><th scope=col>442773</th><th scope=col>⋯</th><th scope=col>430625</th><th scope=col>420344</th><th scope=col>409275</th><th scope=col>428390</th><th scope=col>437341</th><th scope=col>441124</th><th scope=col>426514</th><th scope=col>439112</th><th scope=col>431939</th><th scope=col>446671</th><th scope=row>1</th><th scope=row>12</th><th scope=row>2</th><th scope=row>3</th><th scope=row>4</th><th scope=row>5</th>
    0.00044352647.284975e-050.007366396 0.00109060376.856447e-056.427919e-061.071320e-042.356904e-054.285280e-051.071320e-055.785128e-050.00153198750.00043281320.00048209400.00035567820.003593207 3.578208e-041.499848e-055.142336e-050.0011120301
    0.00102830669.091736e-050.012621837 0.00643632184.295061e-042.821573e-051.542460e-031.598891e-041.912400e-046.897179e-051.159980e-040.00075868970.00181521200.00133867970.00066463720.008000727 1.159980e-041.786996e-041.348085e-040.0007931756
    0.00152067391.534467e-040.018623945 0.00213963303.396517e-043.448240e-064.344783e-043.379275e-048.103364e-055.862008e-052.172391e-040.00296721070.00149826040.00133274480.00061378680.009529212 5.655114e-041.931015e-049.827485e-050.0028223846
    0.00213592012.274716e-040.007325358 0.00140916751.426517e-042.698816e-052.987975e-044.433769e-051.156635e-041.349408e-051.542181e-040.00072482490.00120675630.00105253820.00089446470.006529207 2.255439e-041.002417e-041.889171e-040.0004896423
    0.00628923858.865887e-050.005070179 0.00088104751.163648e-045.541179e-069.974123e-055.541179e-069.974123e-053.324708e-051.440707e-040.00041558840.00034355310.00050424730.00028814130.003097519 7.203533e-053.324708e-052.050236e-040.0001773177
    0.00083322437.023346e-050.007189353 0.00786295542.362398e-049.577290e-064.405554e-041.596215e-052.873187e-051.596215e-052.458171e-040.00643913150.00083003180.00130251150.00045970990.007016961 2.107004e-041.053502e-041.149275e-040.0008459940
    <th scope=col>OTU</th><th scope=col>Sample</th><th scope=col>Abundance</th><th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>⋯</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=row>1695</th><th scope=row>1701</th><th scope=row>1703</th><th scope=row>1791</th><th scope=row>1792</th><th scope=row>1697</th>
    414180 4 0.2924579 27.00000 23.00000 33.00000 5 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 8 0.2096456 21.25000 17.25000 26.50000 9 1.500000 2.75 5.75000 12112.250 18272.34 6.422750 0.9801182 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 B 0.1665314 17.60000 13.20000 25.00000 12 1.600000 1.80 29.60000 12081.400 17894.83 6.613091 0.9839803 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    416710 4 0.1635701 27.00000 23.00000 33.00000 5 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    416710 12 0.1614786 23.33333 22.66667 30.66667 2 1.333333 3.00 32.33333 7587.333 12046.64 6.021041 0.9830369 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    414180 9 0.1609135 21.75000 17.25000 26.25000 10 1.500000 3.50 11.00000 8399.750 12867.00 6.131456 0.9873997 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium

    png

    <th scope=col>OTU</th><th scope=col>Sample</th><th scope=col>Abundance</th><th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>⋯</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=row>1695</th><th scope=row>1701</th><th scope=row>1703</th><th scope=row>1791</th><th scope=row>1792</th><th scope=row>1697</th>
    414180 4 0.2924579 27.00000 23.00000 33.00000 5 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 8 0.2096456 21.25000 17.25000 26.50000 9 1.500000 2.75 5.75000 12112.250 18272.34 6.422750 0.9801182 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 B 0.1665314 17.60000 13.20000 25.00000 12 1.600000 1.80 29.60000 12081.400 17894.83 6.613091 0.9839803 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    416710 4 0.1635701 27.00000 23.00000 33.00000 5 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    416710 12 0.1614786 23.33333 22.66667 30.66667 2 1.333333 3.00 32.33333 7587.333 12046.64 6.021041 0.9830369 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    414180 9 0.1609135 21.75000 17.25000 26.25000 10 1.500000 3.50 11.00000 8399.750 12867.00 6.131456 0.9873997 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium

    png

    yx <- as.data.frame(yx)
    
    levels1=c("1","2","3","4","5","6","7","8","9","12","A","B")
    
    yx$orden <- factor(yx$Sample, levels = levels1)
    
    ggplot(data=yx, aes(x = yx$orden, y= Genus, fill= Abundance))  +
       geom_raster() + theme_minimal () +
       xlab("") + ylab("") +
       scale_fill_gradient(low="#bebebe", high="#000000", na.value = "white", trans = "log10") +
       theme(axis.text.x = element_text(angle = 90, hjust = 1),
             axis.text.y = element_text(size = 5))
    
    ggsave ("heatmap_core.pdf", width=15, height=40, units="cm")
    

    png

    head(merge2)
    intersect0 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X7','X8','X9','X10.A.','X11.B.', 'X12')) #intersección del core, se puede cA.mB.iA.r pA.rA. cuA.lquier suB.conjunto de intersecciones!
    intersect1 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X7','X8','X9','X10.A.','X11.B.', 'X12'))
    intersect2 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X7','X8','X9','X10.A.','X11.B.'))
    intersect3 <- get_intersect_members(merge2,c('X1','X2','X3','X6','X7','X8','X9','X10.A.','X11.B.', 'X12'))
    intersect4 <- get_intersect_members(merge2,c('X2','X3','X4','X5','X6','X7','X8','X9','X10.A.','X11.B.', 'X12'))
    intersect5 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X7','X8','X9','X10.A.','X11.B.'))
    intersect6 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X7','X8','X10.A.','X11.B.', 'X12'))
    intersect7 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X7','X8','X9','X10.A.','X11.B.', 'X12'))
    intersect8 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X7','X8','X11.B.', 'X12'))
    intersect9 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X7','X8','X9','X11.B.', 'X12'))
    intersect10 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X8','X9','X10.A.','X11.B.', 'X12'))
    intersect11 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X8','X9','X10.A.','X11.B.', 'X12'))
    # intersect1 <- (row.names(intersect1)) #identidades del core
    # vec0 <- setNames(nm=c(intersect1))
    # vec
    
    lhs <- paste("intersect",0:11, sep="")
    rhs <- paste("row.names(intersect",0:11,")", sep="")
    eq <- paste(paste(lhs,rhs, sep="<-", collapse=";"))
    eval(parse(text=eq))
    
    
    lhs1 <- paste("vec",0:11, sep="")
    rhs1 <- paste("setNames(nm=c(intersect",0:11,"))", sep="")
    eq <- paste(paste(lhs1,rhs1, sep="<-", collapse=";"))
    eval(parse(text=eq))
    
    
    
    vec <- c(vec0, vec1, vec2, vec3, vec4, vec5, vec6, vec7, vec8, vec9, vec10, vec11)
    
    
    
    
    
    physeqsubsetOTU <- subset_taxa(x3, rownames(tax_table(x3)) %in% vec)
    physeqsubsetOTU
    mergeph1 <- merge_samples(physeqsubsetOTU, "line_number")
    mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
    
        write.table(t(otu_table(mergeph1)),"heatmap_core-lineas.csv",sep="\t")
         write.table(tax_table(mergeph1),"heatmap_core-lineas.tax.csv",sep="\t")
        system("paste heatmap_core-lineas.csv heatmap_core-lineas.tax.csv >heatmap_core-lineas.otutax.csv" )
    
    p <- plot_bar(mergeph1, "Genus")
    
    yx <- p$data
        
        yx <- as.data.frame(yx)
    head(yx)
    yx <- yx[order(-yx$Abundance),]
    
    head(yx)
    levels1=c('1','2','3','4','5','6','7','8','9','10(A)','11(B)','12')
    levels1
    levels2 = rev(t5)
    
    yx$orden <- factor(yx$Sample, levels = levels1)
    yx$abun <- factor(yx$OTU, levels= levels2)
    head(yx$abun)
                                       
                                         #Correción a valores vacios en Género 
        
        ylabvec = as(tax_table(mergeph1)[,"Genus"], "character")
    names(ylabvec) <- taxa_names(mergeph1)
    ylabvec[is.na(ylabvec)] <- ""
        
        #####
    
    # ggplot(data=yx, aes(x = yx$orden, y= reorder(Genus, Abundance), fill= Abundance))  + 
    #    geom_raster() + theme_minimal () +
    #    xlab("") + ylab("") +
    #    scale_fill_gradient(low="#bebebe", high="#000000", na.value = "white", trans = "log10") +
    #    theme(axis.text.x = element_text( angle = 90, hjust = 1),
    #          axis.text.y = element_text(size = 4.2))
                                       
    plot_heatmap(mergeph1, "NULL", sample.order=levels1, taxa.order=rev(t5)) + scale_y_discrete(labels=ylabvec)  + theme_minimal () +
       scale_fill_gradient(low="#F1E8FA", high="#FA7500", na.value = "white", trans = "log10")  +
       theme(axis.text.x = element_text( angle = 90, hjust = 1),
             axis.text.y = element_text(size = 2.5))
        
        ggsave ("heatmap_core-LINEAS.pdf", width=20, height=80, units="cm")
    
    ggsave ("heatmap_core.pdf", width=20, height=80, units="cm")
                                       
                                       head(ylabvec)
    
    <th scope=col>X1</th><th scope=col>X10.A.</th><th scope=col>X11.B.</th><th scope=col>X12</th><th scope=col>X2</th><th scope=col>X3</th><th scope=col>X4</th><th scope=col>X5</th><th scope=col>X6</th><th scope=col>X7</th><th scope=col>X8</th><th scope=col>X9</th><th scope=row>459240</th><th scope=row>426444</th><th scope=row>450333</th><th scope=row>447009</th><th scope=row>399085</th><th scope=row>411630</th>
    101111111111
    111111111111
    000001000110
    111111111111
    111111011111
    111111111111
    phyloseq-class experiment-level object
    otu_table()   OTU Table:         [ 506 taxa and 47 samples ]
    sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
    tax_table()   Taxonomy Table:    [ 506 taxa by 7 taxonomic ranks ]
    phy_tree()    Phylogenetic Tree: [ 506 tips and 504 internal nodes ]
    
    <th scope=col>OTU</th><th scope=col>Sample</th><th scope=col>Abundance</th><th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>⋯</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=row>2006</th><th scope=row>2010</th><th scope=row>2008</th><th scope=row>2108</th><th scope=row>2104</th><th scope=row>2013</th>
    414180 4 0.2921325 30.5 23.00000 33.00000 7 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 8 0.2090064 25.0 17.25000 26.50000 11 1.500000 2.75 5.75000 12112.250 18272.34 6.422750 0.9801182 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 11(B) 0.1658503 21.8 13.20000 25.00000 3 1.600000 1.80 29.60000 12081.400 17894.83 6.613091 0.9839803 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    416710 4 0.1633881 30.5 23.00000 33.00000 7 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    416710 12 0.1605750 23.0 22.66667 30.66667 4 1.333333 3.00 32.33333 7587.333 12046.64 6.021041 0.9830369 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    414180 9 0.1604925 26.0 17.25000 26.25000 12 1.500000 3.50 11.00000 8399.750 12867.00 6.131456 0.9873997 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    <th scope=col>OTU</th><th scope=col>Sample</th><th scope=col>Abundance</th><th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>⋯</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=row>2006</th><th scope=row>2010</th><th scope=row>2008</th><th scope=row>2108</th><th scope=row>2104</th><th scope=row>2013</th>
    414180 4 0.2921325 30.5 23.00000 33.00000 7 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 8 0.2090064 25.0 17.25000 26.50000 11 1.500000 2.75 5.75000 12112.250 18272.34 6.422750 0.9801182 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 11(B) 0.1658503 21.8 13.20000 25.00000 3 1.600000 1.80 29.60000 12081.400 17894.83 6.613091 0.9839803 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    416710 4 0.1633881 30.5 23.00000 33.00000 7 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    416710 12 0.1605750 23.0 22.66667 30.66667 4 1.333333 3.00 32.33333 7587.333 12046.64 6.021041 0.9830369 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    414180 9 0.1604925 26.0 17.25000 26.25000 12 1.500000 3.50 11.00000 8399.750 12867.00 6.131456 0.9873997 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium

    <ol class=list-inline> <li>‘1’</li> <li>‘2’</li> <li>‘3’</li> <li>‘4’</li> <li>‘5’</li> <li>‘6’</li> <li>‘7’</li> <li>‘8’</li> <li>‘9’</li> <li>‘10(A)’</li> <li>‘11(B)’</li> <li>‘12’</li> </ol>

    <ol class=list-inline> <li>414180</li> <li>414180</li> <li>414180</li> <li>416710</li> <li>416710</li> <li>414180</li> </ol>

    <summary style=display:list-item;cursor:pointer> Levels: </summary> <ol class=list-inline>
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  • '81484'
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  • '372212'
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  • '221832'
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  • '609797'
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  • '616902'
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  • '411540'
  • '51629'
  • '586728'
  • '42343'
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  • '658994'
  • '451667'
  • '63'
  • '462943'
  • '402385'
  • '450998'
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  • '383829'
  • '589487'
  • '417478'
  • '335222'
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  • '466157'
  • '21868'
  • '365105'
  • '54850'
  • '585646'
  • '335244'
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  • </ol>
    Scale for 'y' is already present. Adding another scale for 'y', which will
    replace the existing scale.
    Scale for 'fill' is already present. Adding another scale for 'fill', which
    will replace the existing scale.
    Warning message:
    “Transformation introduced infinite values in discrete y-axis”Warning message:
    “Transformation introduced infinite values in discrete y-axis”Warning message:
    “Transformation introduced infinite values in discrete y-axis”
    

    <dl class=dl-horizontal> <dt>459240</dt> <dd>‘g__’</dd> <dt>426444</dt> <dd>‘g__Bifidobacterium’</dd> <dt>447009</dt> <dd>‘g__Tetrasphaera’</dd> <dt>399085</dt> <dd>‘g__Jonesia’</dd> <dt>411630</dt> <dd>‘g__Brachybacterium’</dd> <dt>405472</dt> <dd>‘g__Dermacoccus’</dd> </dl>

    png

    head(merge2)
    intersect0 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X7','X8','X9','A','B', 'X12')) #intersección del core, se puede cA.mB.iA.r pA.rA. cuA.lquier suB.conjunto de intersecciones!
    # intersect1 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X7','X8','X9','X10.A.','X11.B.', 'X12')) 
    # intersect2 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X7','X8','X9','X10.A.','X11.B.'))
    # intersect3 <- get_intersect_members(merge2,c('X1','X2','X3','X6','X7','X8','X9','X10.A.','X11.B.', 'X12'))
    # intersect4 <- get_intersect_members(merge2,c('X2','X3','X4','X5','X6','X7','X8','X9','X10.A.','X11.B.', 'X12'))
    # intersect5 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X7','X8','X9','X10.A.','X11.B.'))
    # intersect6 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X7','X8','X10.A.','X11.B.', 'X12'))
    # intersect7 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X7','X8','X9','X10.A.','X11.B.', 'X12'))
    # intersect8 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X7','X8','X11.B.', 'X12'))
    # intersect9 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X7','X8','X9','X11.B.', 'X12'))
    # intersect10 <- get_intersect_members(merge2,c('X1','X2','X3','X5','X6','X8','X9','X10.A.','X11.B.', 'X12'))
    # intersect11 <- get_intersect_members(merge2,c('X1','X2','X3','X4','X5','X6','X8','X9','X10.A.','X11.B.', 'X12'))
    # intersect1 <- (row.names(intersect1)) #identidades del core
    # vec0 <- setNames(nm=c(intersect1))
    # vec
    
    lhs <- paste("intersect",0, sep="")
    rhs <- paste("row.names(intersect",0,")", sep="")
    eq <- paste(paste(lhs,rhs, sep="<-", collapse=";"))
    eval(parse(text=eq))
    
    
    lhs1 <- paste("vec",0, sep="")
    rhs1 <- paste("setNames(nm=c(intersect",0,"))", sep="")
    eq <- paste(paste(lhs1,rhs1, sep="<-", collapse=";"))
    eval(parse(text=eq))
    
    
    
    # vec <- c(vec0, vec1, vec2, vec3, vec4, vec5, vec6, vec7, vec8, vec9, vec10, vec11)
    
    
    vec <- c(vec0)
    
    
    physeqsubsetOTU <- subset_taxa(x3, rownames(tax_table(x3)) %in% vec)
    physeqsubsetOTU
    mergeph1 <- merge_samples(physeqsubsetOTU, "line_number")
    
    write.table(t(otu_table(mergeph1)),"heatmap_core-GENUS-LINEs.csv",sep="\t")
    write.table(tax_table(mergeph1),"heatmap_core-GENUS-LINEStax.csv",sep="\t")
    
    mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
    
    #     write.table(t(otu_table(mergeph1)),"heatmap_core-lineas19.csv",sep="\t")
    #      write.table(tax_table(mergeph1),"heatmap_core-lineas.tax19.csv",sep="\t")
    #     system("paste heatmap_core-lineas19.csv heatmap_core-lineas.tax19.csv >heatmap_core-lineas.otutax19.csv" )
    
    p <- plot_bar(mergeph1, "Genus")
    
    yx <- p$data
        
        yx <- as.data.frame(yx)
    head(yx)
    yx <- yx[order(-yx$Abundance),]
    
    head(yx)
    levels1=c('1','2','3','4','5','6','7','8','9','A','B','12')
    levels1
    levels2 = rev(t5)
    
    yx$orden <- factor(yx$Sample, levels = levels1)
    yx$abun <- factor(yx$OTU, levels= levels2)
    head(yx$abun)
                                       
                                         #Correción a valores vacios en Género 
        
        ylabvec = as(tax_table(mergeph1)[,"Genus"], "character")
    names(ylabvec) <- taxa_names(mergeph1)
    ylabvec[is.na(ylabvec)] <- ""
        
        #####
    
    # ggplot(data=yx, aes(x = yx$orden, y= reorder(Genus, Abundance), fill= Abundance))  + 
    #    geom_raster() + theme_minimal () +
    #    xlab("") + ylab("") +
    #    scale_fill_gradient(low="#bebebe", high="#000000", na.value = "white", trans = "log10") +
    #    theme(axis.text.x = element_text( angle = 90, hjust = 1),
    #          axis.text.y = element_text(size = 4.2))
                                       
    plot_heatmap(mergeph1, "NULL", sample.order=levels1, taxa.order=rev(t5)) + scale_y_discrete(labels=ylabvec)  + theme_minimal () +
       scale_fill_gradient(low="#F1E8FA", high="#FA7500", na.value = "white", trans = "log10")  +
       theme(axis.text.x = element_text( angle = 90, hjust = 1),
             axis.text.y = element_text(size = 2.5))
        
                               
                                       
        ggsave ("heatmap_core-LINEAS.pdf", width=20, height=80, units="cm")
    
    
                                       
                                       head(ylabvec)
    
    <th scope=col>X1</th><th scope=col>X12</th><th scope=col>X2</th><th scope=col>X3</th><th scope=col>X4</th><th scope=col>X5</th><th scope=col>X6</th><th scope=col>X7</th><th scope=col>X8</th><th scope=col>X9</th><th scope=col>A</th><th scope=col>B</th><th scope=row>459240</th><th scope=row>426444</th><th scope=row>450333</th><th scope=row>447009</th><th scope=row>399085</th><th scope=row>411630</th>
    111111111101
    111111111111
    000100011000
    111111111111
    111101111111
    111111111111
    phyloseq-class experiment-level object
    otu_table()   OTU Table:         [ 420 taxa and 47 samples ]
    sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
    tax_table()   Taxonomy Table:    [ 420 taxa by 7 taxonomic ranks ]
    phy_tree()    Phylogenetic Tree: [ 420 tips and 418 internal nodes ]
    
    <th scope=col>OTU</th><th scope=col>Sample</th><th scope=col>Abundance</th><th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>⋯</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=row>1695</th><th scope=row>1701</th><th scope=row>1703</th><th scope=row>1791</th><th scope=row>1792</th><th scope=row>1697</th>
    414180 4 0.2924579 27.00000 23.00000 33.00000 5 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 8 0.2096456 21.25000 17.25000 26.50000 9 1.500000 2.75 5.75000 12112.250 18272.34 6.422750 0.9801182 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 B 0.1665314 17.60000 13.20000 25.00000 12 1.600000 1.80 29.60000 12081.400 17894.83 6.613091 0.9839803 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    416710 4 0.1635701 27.00000 23.00000 33.00000 5 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    416710 12 0.1614786 23.33333 22.66667 30.66667 2 1.333333 3.00 32.33333 7587.333 12046.64 6.021041 0.9830369 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    414180 9 0.1609135 21.75000 17.25000 26.25000 10 1.500000 3.50 11.00000 8399.750 12867.00 6.131456 0.9873997 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    <th scope=col>OTU</th><th scope=col>Sample</th><th scope=col>Abundance</th><th scope=col>id</th><th scope=col>sample_location</th><th scope=col>sample_id</th><th scope=col>line_number</th><th scope=col>sample_type</th><th scope=col>date</th><th scope=col>time</th><th scope=col>⋯</th><th scope=col>Observed</th><th scope=col>Chao1</th><th scope=col>Shannon</th><th scope=col>Simpson</th><th scope=col>Kingdom</th><th scope=col>Phylum</th><th scope=col>Class</th><th scope=col>Order</th><th scope=col>Family</th><th scope=col>Genus</th><th scope=row>1695</th><th scope=row>1701</th><th scope=row>1703</th><th scope=row>1791</th><th scope=row>1792</th><th scope=row>1697</th>
    414180 4 0.2924579 27.00000 23.00000 33.00000 5 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 8 0.2096456 21.25000 17.25000 26.50000 9 1.500000 2.75 5.75000 12112.250 18272.34 6.422750 0.9801182 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    414180 B 0.1665314 17.60000 13.20000 25.00000 12 1.600000 1.80 29.60000 12081.400 17894.83 6.613091 0.9839803 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium
    416710 4 0.1635701 27.00000 23.00000 33.00000 5 1.000000 1.00 7.50000 8881.000 14102.46 6.122639 0.9801934 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    416710 12 0.1614786 23.33333 22.66667 30.66667 2 1.333333 3.00 32.33333 7587.333 12046.64 6.021041 0.9830369 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Corynebacteriaceae g__Corynebacterium
    414180 9 0.1609135 21.75000 17.25000 26.25000 10 1.500000 3.50 11.00000 8399.750 12867.00 6.131456 0.9873997 k__Bacteria p__Actinobacteria c__Actinobacteria o__Actinomycetales f__Propionibacteriaceaeg__Propionibacterium

    <ol class=list-inline> <li>‘1’</li> <li>‘2’</li> <li>‘3’</li> <li>‘4’</li> <li>‘5’</li> <li>‘6’</li> <li>‘7’</li> <li>‘8’</li> <li>‘9’</li> <li>‘A’</li> <li>‘B’</li> <li>‘12’</li> </ol>

    <ol class=list-inline> <li>414180</li> <li>414180</li> <li>414180</li> <li>416710</li> <li>416710</li> <li>414180</li> </ol>

    <summary style=display:list-item;cursor:pointer> Levels: </summary> <ol class=list-inline>
  • '471867'
  • '421538'
  • '437958'
  • '136800'
  • '463727'
  • '448656'
  • '477237'
  • '370906'
  • '78052'
  • '451667'
  • '658994'
  • '411540'
  • '462943'
  • '618698'
  • '365105'
  • '7439'
  • '659408'
  • '142721'
  • '84562'
  • '447181'
  • '26519'
  • '624788'
  • '77951'
  • '417779'
  • '585576'
  • '66403'
  • '402285'
  • '593853'
  • '76246'
  • '89160'
  • '41078'
  • '7064'
  • '459148'
  • '577937'
  • '431070'
  • '611884'
  • '460542'
  • '1599'
  • '458189'
  • '408512'
  • '610497'
  • '26815'
  • '593763'
  • '87083'
  • '91647'
  • '455404'
  • '425992'
  • '136738'
  • '8114'
  • '585808'
  • '620328'
  • '2337'
  • '57194'
  • '19322'
  • '626088'
  • '612289'
  • '550'
  • '615416'
  • '593979'
  • '439293'
  • '37102'
  • '76544'
  • '41606'
  • '36570'
  • '451699'
  • '368076'
  • '427399'
  • '373535'
  • '36600'
  • '460219'
  • '650729'
  • '460367'
  • '606122'
  • '588929'
  • '431739'
  • '479578'
  • '434515'
  • '73893'
  • '20375'
  • '444440'
  • '593844'
  • '23774'
  • '586605'
  • '610692'
  • '109709'
  • '586387'
  • '444177'
  • '427333'
  • '430059'
  • '450257'
  • '377163'
  • '411873'
  • '436120'
  • '446745'
  • '612601'
  • '629598'
  • '12984'
  • '414321'
  • '472018'
  • '13555'
  • '423843'
  • '54893'
  • '377133'
  • '363813'
  • '136919'
  • '437767'
  • '416139'
  • '627644'
  • '415522'
  • '32085'
  • '12175'
  • '405302'
  • '610678'
  • '13889'
  • '610360'
  • '578858'
  • '9274'
  • '476037'
  • '616178'
  • '410289'
  • '613990'
  • '39298'
  • '334273'
  • '459088'
  • '18480'
  • '439112'
  • '34865'
  • '12136'
  • '12259'
  • '430978'
  • '601221'
  • '589148'
  • '405576'
  • '471947'
  • '659443'
  • '447009'
  • '405422'
  • '610017'
  • '597412'
  • '452363'
  • '280929'
  • '597454'
  • '593922'
  • '2705'
  • '594161'
  • '619233'
  • '461352'
  • '12220'
  • '413470'
  • '449755'
  • '430625'
  • '447987'
  • '50867'
  • '372548'
  • '156955'
  • '611559'
  • '615312'
  • '614514'
  • '610478'
  • '369946'
  • '614149'
  • '26840'
  • '35775'
  • '411759'
  • '6067'
  • '610912'
  • '610839'
  • '375033'
  • '86054'
  • '366092'
  • '80183'
  • '449445'
  • '55469'
  • '69324'
  • '609766'
  • '626785'
  • '16589'
  • '51013'
  • '370945'
  • '610449'
  • '406147'
  • '23690'
  • '586656'
  • '364240'
  • '416337'
  • '610936'
  • '610781'
  • '612474'
  • '363483'
  • '451281'
  • '611161'
  • '617413'
  • '53099'
  • '38948'
  • '19866'
  • '113020'
  • '442773'
  • '363774'
  • '365019'
  • '614508'
  • '610982'
  • '587246'
  • '412648'
  • '435200'
  • '365025'
  • '610126'
  • '410759'
  • '612673'
  • '359872'
  • '14443'
  • '377715'
  • '612115'
  • '610022'
  • '24681'
  • '19641'
  • '8945'
  • '431939'
  • '109653'
  • '20050'
  • '426514'
  • '448617'
  • '589958'
  • '597358'
  • '18949'
  • '624015'
  • '396712'
  • '611331'
  • '448932'
  • '375356'
  • '427270'
  • '420245'
  • '363834'
  • '9657'
  • '595047'
  • '610907'
  • '610457'
  • '583880'
  • '434933'
  • '25268'
  • '448725'
  • '449468'
  • '586417'
  • '609983'
  • '420377'
  • '428344'
  • '608894'
  • '609876'
  • '10161'
  • '428135'
  • '612991'
  • '616224'
  • '611811'
  • '397576'
  • '15639'
  • '12211'
  • '769'
  • '435636'
  • '611480'
  • '611582'
  • '609632'
  • '420579'
  • '110225'
  • '14252'
  • '27858'
  • '426696'
  • '610684'
  • '595433'
  • '7729'
  • '21753'
  • '9204'
  • '446598'
  • '444195'
  • '5482'
  • '12166'
  • '424742'
  • '18766'
  • '24575'
  • '410092'
  • '12146'
  • '609978'
  • '13662'
  • '426939'
  • '597451'
  • '609698'
  • '363540'
  • '648'
  • '610168'
  • '437341'
  • '471778'
  • '447628'
  • '6654'
  • '18551'
  • '610051'
  • '2182'
  • '7998'
  • '10386'
  • '435657'
  • '364283'
  • '8896'
  • '406908'
  • '12074'
  • '603515'
  • '431472'
  • '658768'
  • '586284'
  • '15009'
  • '431910'
  • '448507'
  • '609777'
  • '409275'
  • '428390'
  • '446671'
  • '440949'
  • '609840'
  • '610501'
  • '423061'
  • '436034'
  • '582162'
  • '610992'
  • '586158'
  • '783'
  • '427741'
  • '459305'
  • '5848'
  • '433202'
  • '88867'
  • '12383'
  • '1768'
  • '7516'
  • '609800'
  • '431267'
  • '436581'
  • '430883'
  • '407618'
  • '609729'
  • '363489'
  • '848'
  • '420264'
  • '201'
  • '318'
  • '270'
  • '619366'
  • '363726'
  • '420344'
  • '426444'
  • '9569'
  • '416077'
  • '7312'
  • '5137'
  • '613047'
  • '363484'
  • '374772'
  • '424461'
  • '6802'
  • '1891'
  • '1302'
  • '1391'
  • '405883'
  • '609633'
  • '447452'
  • '405472'
  • '4427'
  • '48372'
  • '613011'
  • '365341'
  • '5405'
  • '16922'
  • '618776'
  • '436075'
  • '526192'
  • '7642'
  • '85'
  • '417274'
  • '597541'
  • '5363'
  • '464306'
  • '418998'
  • '55238'
  • '447167'
  • '2'
  • '415588'
  • '5610'
  • '7743'
  • '401629'
  • '0'
  • '594606'
  • '332'
  • '487684'
  • '6905'
  • '3713'
  • '536'
  • '581015'
  • '1567'
  • '4011'
  • '621816'
  • '431705'
  • '405577'
  • '441124'
  • '448273'
  • '5842'
  • '237'
  • '441149'
  • '2872'
  • '919'
  • '407471'
  • '411630'
  • '363378'
  • '2752'
  • '423705'
  • '407005'
  • '106592'
  • '429324'
  • '198'
  • '16'
  • '406268'
  • '577669'
  • '196'
  • '128'
  • '416710'
  • '414180'
  • </ol>
    Scale for 'y' is already present. Adding another scale for 'y', which will
    replace the existing scale.
    Scale for 'fill' is already present. Adding another scale for 'fill', which
    will replace the existing scale.
    

    <dl class=dl-horizontal> <dt>426444</dt> <dd>‘g__Bifidobacterium’</dd> <dt>447009</dt> <dd>‘g__Tetrasphaera’</dd> <dt>411630</dt> <dd>‘g__Brachybacterium’</dd> <dt>405472</dt> <dd>‘g__Dermacoccus’</dd> <dt>451281</dt> <dd>‘g__’</dd> <dt>448656</dt> <dd>‘g__Pilimelia’</dd> </dl>

    png

    library(RColorBrewer)
    svg("heatmap_core-LINEAS.svg")
    plot_heatmap(mergeph1, "NULL", sample.order=levels1, taxa.order=rev(t5)) + scale_y_discrete(labels=ylabvec)  + theme_minimal () +
       scale_fill_gradient(low="#feffb6", high="#8d0202", na.value = "white", trans = "log2")  +
       theme(axis.text.x = element_text( angle = 90, hjust = 1),
             axis.text.y = element_text(size = 2.5))
    dev.off()    
                               
                                       
        ggsave ("heatmap_core-LINEASlog2.png", width=20, height=80, units="cm")
    
    Scale for 'y' is already present. Adding another scale for 'y', which will
    replace the existing scale.
    Scale for 'fill' is already present. Adding another scale for 'fill', which
    will replace the existing scale.
    

    png: 2

    plot_heatmap(mergeph1, "NULL", sample.order=levels1, taxa.order=rev(t5)) + scale_y_discrete(labels=ylabvec)  + theme_minimal () +
       scale_fill_gradient(low="#feffb6", high="#8d0202", na.value = "white", trans="log10")  +
       theme(axis.text.x = element_text( angle = 90, hjust = 1),
             axis.text.y = element_text(size = 2.5))
    ggsave ("heatmap_core-LINEASlog10.png", width=20, height=80, units="cm")
    
    Scale for 'y' is already present. Adding another scale for 'y', which will
    replace the existing scale.
    Scale for 'fill' is already present. Adding another scale for 'fill', which
    will replace the existing scale.
    

    png

    
    t1 <- as.data.frame(colSums(otu_table(mergeph1)))
    
    # write.table(t, "vennupset.txt") 
    t <-(tax_table(mergeph1)) #hago esto porque el melt sobre este objeto phyloseq no trabaja, creo que hay que usar psmelt para esto
    
    write.table(t, "taxvennupset.txt") 
    t <- as.data.frame(read.table("taxvennupset.txt", header=T, row.names = 1))
    
    # system("paste vennupset.txt taxvennupset.txt >coreupset.txt")
    
    # read.table("coreupset.txt", header=T, sep="\t") 
    t3 <- merge(t,t1, by=0, all=TRUE )
    
    names(t3)[9] <-"abundance"
    
    t4 <- t3[order(-t3$abundance),]
    write.table(t4, "taxvennupset-lineas.txt")
     t5 <-   as.vector(t4$Row.names)
    head(t5)
    summary(t4)
    

    <ol class=list-inline> <li>‘414180’</li> <li>‘416710’</li> <li>‘128’</li> <li>‘196’</li> <li>‘577669’</li> <li>‘406268’</li> </ol>

      Row.names                Kingdom                  Phylum   
     Length:506         k__Bacteria:506   p__Actinobacteria:156  
     Class :AsIs                          p__Proteobacteria:154  
     Mode  :character                     p__Firmicutes    :110  
                                          p__Bacteroidetes : 36  
                                          p__Chloroflexi   :  8  
                                          p__TM7           :  7  
                                          (Other)          : 35  
                        Class                    Order    
     c__Actinobacteria     :138   o__Actinomycetales:133  
     c__Alphaproteobacteria: 57   o__Clostridiales  : 47  
     c__Bacilli            : 57   o__Bacillales     : 28  
     c__Gammaproteobacteria: 56   o__Lactobacillales: 25  
     c__Clostridia         : 48   o__Burkholderiales: 24  
     c__Betaproteobacteria : 36   o__Rhizobiales    : 18  
     (Other)               :114   (Other)           :231  
                       Family                  Genus     Species       
     f__                  : 50   g__              :158   Mode:logical  
     f__Microbacteriaceae : 16   g__Gordonia      :  2   NA's:506      
     f__Comamonadaceae    : 13   g__Staphylococcus:  2                 
     f__Intrasporangiaceae: 13   g__Vibrio        :  2                 
     f__Enterobacteriaceae: 12   g__1-68          :  1                 
     f__Lachnospiraceae   : 11   g__Abies         :  1                 
     (Other)              :391   (Other)          :340                 
       abundance        
     Min.   :0.0000622  
     1st Qu.:0.0006692  
     Median :0.0020158  
     Mean   :0.0237154  
     3rd Qu.:0.0092460  
     Max.   :1.7750681  
    
    head(otu_table(x3))
    head(otu_table(physeqsubsetOTU))
    
    
    write.table((otu_table(x3)),"x3.csv",sep="\t")
    write.table((otu_table(physeqsubsetOTU)),"x3core.csv",sep="\t")
    # #      write.table(tax_table(mergeph1),"heatmap_core-Metro-Entrada.tax.csv",sep="\t")
    
    <th scope=col>AM03</th><th scope=col>AM23</th><th scope=col>AM17</th><th scope=col>AM01</th><th scope=col>AM02</th><th scope=col>AM06</th><th scope=col>AM07</th><th scope=col>AM08</th><th scope=col>AM09</th><th scope=col>AM10</th><th scope=col>⋯</th><th scope=col>AM47</th><th scope=col>AM04</th><th scope=col>AM13</th><th scope=col>AM35</th><th scope=col>AM36</th><th scope=col>AM40</th><th scope=col>AM43</th><th scope=col>AM44</th><th scope=col>AM48</th><th scope=col>AM05</th><th scope=row>459240</th><th scope=row>426444</th><th scope=row>450333</th><th scope=row>447009</th><th scope=row>399085</th><th scope=row>411630</th>
    0 12 2 1 0 1 0 0 0 1 0 11 0 0 0 0 0 6 0 0
    63 75103 616 121 86 274145 321 56 27 273 59 22 2501042 37 87 22 3
    1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
    12 9 26 15 7 9 8 2 7 9 21 35 9 6 15 14 2 15 5 0
    5 60 1 4 1 2 31 0 3 2 1 8 2 1 9 0 0 0 0 0
    347 2307761 839 1176560 4741673 2557668 505 2645950 367 3003 666162 173 355 45
    <th scope=col>AM03</th><th scope=col>AM23</th><th scope=col>AM17</th><th scope=col>AM01</th><th scope=col>AM02</th><th scope=col>AM06</th><th scope=col>AM07</th><th scope=col>AM08</th><th scope=col>AM09</th><th scope=col>AM10</th><th scope=col>⋯</th><th scope=col>AM47</th><th scope=col>AM04</th><th scope=col>AM13</th><th scope=col>AM35</th><th scope=col>AM36</th><th scope=col>AM40</th><th scope=col>AM43</th><th scope=col>AM44</th><th scope=col>AM48</th><th scope=col>AM05</th><th scope=row>426444</th><th scope=row>447009</th><th scope=row>411630</th><th scope=row>405472</th><th scope=row>451281</th><th scope=row>448656</th>
    63 75103 616 121 86 274145 321 56 27 273 59 22 2501042 37 87 22 3
    12 9 26 15 7 9 8 2 7 9 21 35 9 6 15 14 2 15 5 0
    347 2307761 839 1176560 4741673 2557668 505 2645950 367 3003 666162 173 35545
    98 160189 111 236257 242130 310342 37 272177 107 199 122 53 90 1512 4
    27 8 31 14 55 13 24 8 24 80 32 38 34 23 21 17 5 8 36 1
    1 2 9 4 2 1 1 1 0 6 0 1 4 0 3 0 0 0 0 0

    #Comparación Torniquete, pasamanos

    library(DESeq2)
    library(RColorBrewer)
    library(ggplot2)
    library(phyloseq)
    library(plyr)
    
    metro_sig=subset_samples(metro, sample_type !="NA" )
    metro_sig
    obj1deseq = phyloseq_to_deseq2(metro_sig, ~sample_type)
    
    
    gm_mean = function(x, na.rm=TRUE){
      exp(sum(log(x[x > 0]), na.rm=na.rm) / length(x))
    }
    
    geoMeans = apply(counts(obj1deseq), 1, gm_mean)
    obj1deseq = estimateSizeFactors(obj1deseq, geoMeans = geoMeans)
    
    ##adición de la viñeta para el error de la media de 0s
    obj1deseq = DESeq(obj1deseq, fitType="local")
    
    #obj1deseq = DESeq(obj1deseq, test="Wald", fitType="parametric")
    
    Loading required package: S4Vectors
    Loading required package: stats4
    Loading required package: BiocGenerics
    Loading required package: parallel
    
    Attaching package: ‘BiocGenerics’
    
    The following objects are masked from ‘package:parallel’:
    
        clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
        clusterExport, clusterMap, parApply, parCapply, parLapply,
        parLapplyLB, parRapply, parSapply, parSapplyLB
    
    The following objects are masked from ‘package:dplyr’:
    
        combine, intersect, setdiff, union
    
    The following objects are masked from ‘package:stats’:
    
        IQR, mad, sd, var, xtabs
    
    The following objects are masked from ‘package:base’:
    
        anyDuplicated, append, as.data.frame, basename, cbind, colMeans,
        colnames, colSums, dirname, do.call, duplicated, eval, evalq,
        Filter, Find, get, grep, grepl, intersect, is.unsorted, lapply,
        lengths, Map, mapply, match, mget, order, paste, pmax, pmax.int,
        pmin, pmin.int, Position, rank, rbind, Reduce, rowMeans, rownames,
        rowSums, sapply, setdiff, sort, table, tapply, union, unique,
        unsplit, which, which.max, which.min
    
    
    Attaching package: ‘S4Vectors’
    
    The following objects are masked from ‘package:dplyr’:
    
        first, rename
    
    The following object is masked from ‘package:tidyr’:
    
        expand
    
    The following object is masked from ‘package:base’:
    
        expand.grid
    
    Loading required package: IRanges
    
    Attaching package: ‘IRanges’
    
    The following object is masked from ‘package:phyloseq’:
    
        distance
    
    The following objects are masked from ‘package:dplyr’:
    
        collapse, desc, slice
    
    The following object is masked from ‘package:purrr’:
    
        reduce
    
    Loading required package: GenomicRanges
    Loading required package: GenomeInfoDb
    Loading required package: SummarizedExperiment
    Loading required package: Biobase
    Welcome to Bioconductor
    
        Vignettes contain introductory material; view with
        'browseVignettes()'. To cite Bioconductor, see
        'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    
    Attaching package: ‘Biobase’
    
    The following object is masked from ‘package:phyloseq’:
    
        sampleNames
    
    Loading required package: DelayedArray
    Loading required package: matrixStats
    
    Attaching package: ‘matrixStats’
    
    The following objects are masked from ‘package:Biobase’:
    
        anyMissing, rowMedians
    
    The following object is masked from ‘package:dplyr’:
    
        count
    
    Loading required package: BiocParallel
    
    Attaching package: ‘DelayedArray’
    
    The following objects are masked from ‘package:matrixStats’:
    
        colMaxs, colMins, colRanges, rowMaxs, rowMins, rowRanges
    
    The following object is masked from ‘package:purrr’:
    
        simplify
    
    The following objects are masked from ‘package:base’:
    
        aperm, apply
    
    ------------------------------------------------------------------------------
    You have loaded plyr after dplyr - this is likely to cause problems.
    If you need functions from both plyr and dplyr, please load plyr first, then dplyr:
    library(plyr); library(dplyr)
    ------------------------------------------------------------------------------
    
    Attaching package: ‘plyr’
    
    The following object is masked from ‘package:matrixStats’:
    
        count
    
    The following object is masked from ‘package:IRanges’:
    
        desc
    
    The following object is masked from ‘package:S4Vectors’:
    
        rename
    
    The following objects are masked from ‘package:dplyr’:
    
        arrange, count, desc, failwith, id, mutate, rename, summarise,
        summarize
    
    The following object is masked from ‘package:purrr’:
    
        compact
    
    
    
    
    phyloseq-class experiment-level object
    otu_table()   OTU Table:         [ 50174 taxa and 47 samples ]
    sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
    tax_table()   Taxonomy Table:    [ 50174 taxa by 7 taxonomic ranks ]
    phy_tree()    Phylogenetic Tree: [ 50174 tips and 50172 internal nodes ]
    
    
    converting counts to integer mode
    using pre-existing size factors
    estimating dispersions
    gene-wise dispersion estimates
    mean-dispersion relationship
    final dispersion estimates
    fitting model and testing
    -- replacing outliers and refitting for 2437 genes
    -- DESeq argument 'minReplicatesForReplace' = 7 
    -- original counts are preserved in counts(dds)
    estimating dispersions
    fitting model and testing
    
    res = results(obj1deseq, cooksCutoff = FALSE)
    # quick explanation of Cook's distance: it measures within each gene, for each sample, how removing that sample would change the LFCs (all of the coefficients implied by the design and estimated by DESeq2). So if you have e.g. 3 samples vs 2 samples, and the counts for a gene are [10,10,10] vs [15, 1000], you can see how the Cook's distance will be high for the two samples. Removing either one changes the LFC for the comparison of the two groups. However, if it were [10,10,10] vs [50,50], the two samples "support" each other, such that removing one doesn't change the LFC at all. Hence, we find Cook's to be useful for identifying outliers.
    alpha = 0.01
    sigtab = res[which(res$padj < alpha), ]
    sigtab = cbind(as(sigtab, "data.frame"), as(tax_table(metro_sig)[rownames(sigtab), ], "matrix"))
    # Phylum order
    x = tapply(sigtab$log2FoldChange, sigtab$Phylum, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Phylum = factor(as.character(sigtab$Phylum), levels=names(x))
    # Genus order
    x = tapply(sigtab$log2FoldChange, sigtab$Genus, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Genus = factor(as.character(sigtab$Genus), levels=names(x))
    
    ggplot(sigtab, aes(x=Genus, y=log2FoldChange, color=Phylum)) + scale_color_manual(values=colorRampPalette(brewer.pal(8,"Dark2"))(20))+geom_point(size=3)+theme_light() +theme(axis.text.x = element_text(angle = -90, hjust = 0, vjust=0.5)) + coord_flip()
    #sigtab
    #ggsave ("torniquete_pasamanos_SIG.pdf", width=30, height=15, units="cm")
    sigtab
               
     write.table(sigtab,"handrail-turnstileOR.csv",sep="\t")           
    

    Arriba Torniquete, abajo pasamanos

    sub <- subset_taxa(metro, rownames(tax_table(metro)) %in% c("426399","446671","445944","444595"))
    merge1 = merge_samples(sub, "sample_type")
    t(otu_table(merge1))
    
    #compara terminal y tren
    metro
    # metro_sig=subset_samples(metro, station != c("Correspondecia","Terminal","Paso"))
    metro_sig = metro
    
    
    # sample_data(metro_sig)$var = factor (get_variable(metro_sig, "station") %in% c("Terminal_correspondencia"))
    # metro_sig
    obj1deseq = phyloseq_to_deseq2(metro_sig, ~train_notes)
    
    
    gm_mean = function(x, na.rm=TRUE){
      exp(sum(log(x[x > 0]), na.rm=na.rm) / length(x))
    }
    
    geoMeans = apply(counts(obj1deseq), 1, gm_mean)
    obj1deseq = estimateSizeFactors(obj1deseq, geoMeans = geoMeans)
    
    ##adición de la viñeta para el error de la media de 0s
    obj1deseq = DESeq(obj1deseq, fitType="local")
    
    #obj1deseq = DESeq(obj1deseq, test="Wald", fitType="parametric")
    
    
    
    res = results(obj1deseq, cooksCutoff = FALSE)
    # quick explanation of Cook's distance: it measures within each gene, for each sample, how removing that sample would change the LFCs (all of the coefficients implied by the design and estimated by DESeq2). So if you have e.g. 3 samples vs 2 samples, and the counts for a gene are [10,10,10] vs [15, 1000], you can see how the Cook's distance will be high for the two samples. Removing either one changes the LFC for the comparison of the two groups. However, if it were [10,10,10] vs [50,50], the two samples "support" each other, such that removing one doesn't change the LFC at all. Hence, we find Cook's to be useful for identifying outliers.
    alpha = 0.01
    sigtab = res[which(res$padj < alpha), ]
    sigtab = cbind(as(sigtab, "data.frame"), as(tax_table(metro_sig)[rownames(sigtab), ], "matrix"))
    # Phylum order
    x = tapply(sigtab$log2FoldChange, sigtab$Phylum, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Phylum = factor(as.character(sigtab$Phylum), levels=names(x))
    # Genus order
    x = tapply(sigtab$log2FoldChange, sigtab$Genus, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Genus = factor(as.character(sigtab$Genus), levels=names(x))
    
    ggplot(sigtab, aes(x=Genus, y=log2FoldChange, color=Phylum)) + scale_color_manual(values=colorRampPalette(brewer.pal(8,"Dark2"))(20))+geom_point(size=3)+theme_light() +theme(axis.text.x = element_text(angle = -90, hjust = 0, vjust=0.5))
    #sigtab
    ggsave ("oruga_independiente_SIG.pdf", width=30, height=15, units="cm")
    sigtab
    
    
    #compara terminal y tren
    metro
    #
    metro_sig = metro
    
    metro_sig=subset_samples(metro, station_notes == "Superficial","Tunel")
    sample_data(metro_sig)$var = factor (get_variable(metro_sig, "station_notes") %in% c("Cajon_subterraneo"))
    # metro_sig
    obj1deseq = phyloseq_to_deseq2(metro_sig, ~station_notes)
    
    
    gm_mean = function(x, na.rm=TRUE){
      exp(sum(log(x[x > 0]), na.rm=na.rm) / length(x))
    }
    
    geoMeans = apply(counts(obj1deseq), 1, gm_mean)
    obj1deseq = estimateSizeFactors(obj1deseq, geoMeans = geoMeans)
    
    ##adición de la viñeta para el error de la media de 0s
    obj1deseq = DESeq(obj1deseq, fitType="local")
    
    #obj1deseq = DESeq(obj1deseq, test="Wald", fitType="parametric")
    
    res = results(obj1deseq, cooksCutoff = FALSE)
    # quick explanation of Cook's distance: it measures within each gene, for each sample, how removing that sample would change the LFCs (all of the coefficients implied by the design and estimated by DESeq2). So if you have e.g. 3 samples vs 2 samples, and the counts for a gene are [10,10,10] vs [15, 1000], you can see how the Cook's distance will be high for the two samples. Removing either one changes the LFC for the comparison of the two groups. However, if it were [10,10,10] vs [50,50], the two samples "support" each other, such that removing one doesn't change the LFC at all. Hence, we find Cook's to be useful for identifying outliers.
    alpha = 0.01
    sigtab = res[which(res$padj < alpha), ]
    sigtab = cbind(as(sigtab, "data.frame"), as(tax_table(metro_sig)[rownames(sigtab), ], "matrix"))
    # Phylum order
    x = tapply(sigtab$log2FoldChange, sigtab$Phylum, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Phylum = factor(as.character(sigtab$Phylum), levels=names(x))
    # Genus order
    x = tapply(sigtab$log2FoldChange, sigtab$Genus, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Genus = factor(as.character(sigtab$Genus), levels=names(x))
    
    ggplot(sigtab, aes(x=Genus, y=log2FoldChange, color=Phylum)) + scale_color_manual(values=colorRampPalette(brewer.pal(8,"Dark2"))(20))+geom_point(size=3)+theme_light() +theme(axis.text.x = element_text(angle = -90, hjust = 0, vjust=0.5))
    #sigtab
    ggsave ("Subterraneo_elevado_SIG.pdf", width=30, height=15, units="cm")
    sigtab
    
    
    #compara subterraneo y superficial
    metro
    #
    metro_sig = metro
    
    metro_sig=subset_samples(metro, station_notes != c("NA","Elevada","Tunel"))
    sample_data(metro_sig)$var = factor (get_variable(metro_sig, "station_notes") %in% c("Cajon_subterraneo"))
    # metro_sig
    obj1deseq = phyloseq_to_deseq2(metro_sig, ~station_notes)
    
    
    gm_mean = function(x, na.rm=TRUE){
      exp(sum(log(x[x > 0]), na.rm=na.rm) / length(x))
    }
    
    geoMeans = apply(counts(obj1deseq), 1, gm_mean)
    obj1deseq = estimateSizeFactors(obj1deseq, geoMeans = geoMeans)
    
    ##adición de la viñeta para el error de la media de 0s
    obj1deseq = DESeq(obj1deseq, fitType="local")
    
    #obj1deseq = DESeq(obj1deseq, test="Wald", fitType="parametric")
    
    res = results(obj1deseq, cooksCutoff = FALSE)
    # quick explanation of Cook's distance: it measures within each gene, for each sample, how removing that sample would change the LFCs (all of the coefficients implied by the design and estimated by DESeq2). So if you have e.g. 3 samples vs 2 samples, and the counts for a gene are [10,10,10] vs [15, 1000], you can see how the Cook's distance will be high for the two samples. Removing either one changes the LFC for the comparison of the two groups. However, if it were [10,10,10] vs [50,50], the two samples "support" each other, such that removing one doesn't change the LFC at all. Hence, we find Cook's to be useful for identifying outliers.
    alpha = 0.01
    sigtab = res[which(res$padj < alpha), ]
    sigtab = cbind(as(sigtab, "data.frame"), as(tax_table(metro_sig)[rownames(sigtab), ], "matrix"))
    # Phylum order
    x = tapply(sigtab$log2FoldChange, sigtab$Phylum, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Phylum = factor(as.character(sigtab$Phylum), levels=names(x))
    # Genus order
    x = tapply(sigtab$log2FoldChange, sigtab$Genus, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Genus = factor(as.character(sigtab$Genus), levels=names(x))
    
    ggplot(sigtab, aes(x=Genus, y=log2FoldChange, color=Phylum)) + scale_color_manual(values=colorRampPalette(brewer.pal(8,"Dark2"))(20))+geom_point(size=3)+theme_light() +theme(axis.text.x = element_text(angle = -90, hjust = 0, vjust=0.5))
    #sigtab
    ggsave ("Subterraneo_superficial_SIG.pdf", width=30, height=15, units="cm")
    sigtab
    
    #compara subterraneo y superficial
    metro
    #
    metro_sig = metro
    
    metro_sig=subset_samples(metro, station_notes != c("NA","Tunel","Cajon_subterraneo"))
    sample_data(metro_sig)$var = factor (get_variable(metro_sig, "station_notes") %in% c("Elevada"))
    # metro_sig
    obj1deseq = phyloseq_to_deseq2(metro_sig, ~station_notes)
    
    
    gm_mean = function(x, na.rm=TRUE){
      exp(sum(log(x[x > 0]), na.rm=na.rm) / length(x))
    }
    
    geoMeans = apply(counts(obj1deseq), 1, gm_mean)
    obj1deseq = estimateSizeFactors(obj1deseq, geoMeans = geoMeans)
    
    ##adición de la viñeta para el error de la media de 0s
    obj1deseq = DESeq(obj1deseq, fitType="local")
    
    #obj1deseq = DESeq(obj1deseq, test="Wald", fitType="parametric")
    
    res = results(obj1deseq, cooksCutoff = FALSE)
    # quick explanation of Cook's distance: it measures within each gene, for each sample, how removing that sample would change the LFCs (all of the coefficients implied by the design and estimated by DESeq2). So if you have e.g. 3 samples vs 2 samples, and the counts for a gene are [10,10,10] vs [15, 1000], you can see how the Cook's distance will be high for the two samples. Removing either one changes the LFC for the comparison of the two groups. However, if it were [10,10,10] vs [50,50], the two samples "support" each other, such that removing one doesn't change the LFC at all. Hence, we find Cook's to be useful for identifying outliers.
    alpha = 0.01
    sigtab = res[which(res$padj < alpha), ]
    sigtab = cbind(as(sigtab, "data.frame"), as(tax_table(metro_sig)[rownames(sigtab), ], "matrix"))
    # Phylum order
    x = tapply(sigtab$log2FoldChange, sigtab$Phylum, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Phylum = factor(as.character(sigtab$Phylum), levels=names(x))
    # Genus order
    x = tapply(sigtab$log2FoldChange, sigtab$Genus, function(x) max(x))
    x = sort(x, TRUE)
    sigtab$Genus = factor(as.character(sigtab$Genus), levels=names(x))
    
    ggplot(sigtab, aes(x=Genus, y=log2FoldChange, color=Phylum)) + scale_color_manual(values=colorRampPalette(brewer.pal(8,"Dark2"))(20))+geom_point(size=3)+theme_light() +theme(axis.text.x = element_text(angle = -90, hjust = 0, vjust=0.5))
    #sigtab
    ggsave ("elevado_superficial_SIG.pdf", width=30, height=15, units="cm")
    sigtab
    
    library(ggplot2)
    library(vegan)
    library(phyloseq)
    library(microbiomeSeq)
    library(igraph)
    require(visNetwork)
    library(plyr)
    library(dplyr)
    
    # gpt <- prune_taxa(names(sort(taxa_sums(metro),TRUE)[1:10000]),metro)
    # x2 <- tax_glom(gpt, taxrank="Genus") 
    
    x2 <- tax_glom(metro, taxrank="Genus") 
    net <- make_network(x2, type="taxa")
    plot_network(net)
    
    #net
    
    gd <- simplify(net)
    #gd <- net
    vcount(gd)
    ecount(gd)
    
    degAll <- degree(gd, v = V(gd), mode = "all")
    
    
    
    #sort((degAll), decreasing=T)
    
    betAll <- betweenness(gd, v = V(gd), directed = FALSE) / (((vcount(gd) - 1) * (vcount(gd)-2)) / 2)
    betAll.norm <- (betAll - min(betAll))/(max(betAll) - min(betAll))
    rm(betAll)
    
    deg <- degree(gd, mode="all")
    
    
    ceb <- cluster_edge_betweenness(gd) 
    
    class(ceb)
    
    
    length(ceb)     # number of communities
    ## [1] 5
    
    #membership(ceb) # community membership for each node
    ## s01 s02 s03 s04 s05 s06 s07 s08 s09 s10 s11 s12 s13 s14 s15 s16 s17 
    
    ##   1   2   3   4   1   4   3   3   5   5   4   4   4   4   1   4   4
    modularity(ceb) # how modular the graph partitioning is
    #High modularity for a partitioning reflects dense connections within communities 
    #and sparse connections across communities.
    
    
    #plot(gd, vertex.size=deg*3)
    
    #require(visNetwork)
    
    #plot(gd, vertex.size=deg*3)
    
    #require(visNetwork)
    
    #visIgraph(gd)
    
    
    
    
    
    Attaching package: ‘igraph’
    
    The following objects are masked from ‘package:ape’:
    
        edges, mst, ring
    
    The following object is masked from ‘package:vegan’:
    
        diversity
    
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        permute
    
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    The following object is masked from ‘package:base’:
    
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    Loading required package: visNetwork
    ------------------------------------------------------------------------------
    You have loaded plyr after dplyr - this is likely to cause problems.
    If you need functions from both plyr and dplyr, please load plyr first, then dplyr:
    library(plyr); library(dplyr)
    ------------------------------------------------------------------------------
    
    Attaching package: ‘plyr’
    
    The following objects are masked from ‘package:dplyr’:
    
        arrange, count, desc, failwith, id, mutate, rename, summarise,
        summarize
    
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    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Warning message:
    “attributes are not identical across measure variables; they will be dropped”
    

    217

    299

    ‘communities’

    54

    0.905655417724634

    png

    require(visNetwork)
    data <- toVisNetworkData(gd)
    visIgraph(gd) %>% visOptions(highlightNearest = TRUE, 
        nodesIdSelection = TRUE)
    
    data <- toVisNetworkData(net)
    #data$nodes$id
    #data
    physeq.subset <- subset_taxa(x2, rownames(tax_table(x2)) %in% c(data$nodes$id))
    data2 <- as.data.frame.matrix(tax_table(physeq.subset)[,6]) #generar una lista con solamente la anotación a nivel género
    #names(data2)
    data3 <- as.data.frame.matrix(tax_table(physeq.subset)[,2]) #phylum
    
    
    
    library(dplyr)
    df1 <- add_rownames(data2, "id") #generar una columna con los identificadores de OTUs
    
    df2 <- add_rownames(data3, "id")
    
    
    total <- merge(df1,df2,by="id")
    total
    #df = df[,c(3,1,2)]
    #colnames(df)[1] <- ""
    
    write.table(total, "nodes_id.txt")
    #awk '{print $2 $2 $3 $4}' nodes_id.txt | perl -pe 's/\ //g;s/\"\"/\t/g;s/\"//g;s/^Genus/\tid/g;s/Genus\tPhylum/label/g;s/\tp__/_p__/g;s/__/_/g' >nodes_id; mv nodes_id nodes_id.txt)
    #editar este archivo (quitar " y tabuladores de más) a algo así: 
    #    id	label
    #109854	109854	g__p_GN04
    df <- as.data.frame(read.table("nodes_id.txt", header=TRUE, row.names = 1))
    
    #df
    
    
    

    <!doctype html>

    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
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    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
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    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
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    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Warning message:
    “Deprecated, use tibble::rownames_to_column() instead.”Warning message:
    “Deprecated, use tibble::rownames_to_column() instead.”
    
    <th scope=col>id</th><th scope=col>Genus</th><th scope=col>Phylum</th>
    0 g__ p__Firmicutes
    105778 g__ p__Chlamydiae
    109864 g__Dyella p__Proteobacteria
    111614 g__Uliginosibacterium p__Proteobacteria
    12179 g__ p__Verrucomicrobia
    122651 g__ p__Proteobacteria
    12387 g__Celerinatantimonas p__Proteobacteria
    124693 g__ p__Verrucomicrobia
    134516 g__Syntrophomonas p__Firmicutes
    142637 g__ p__NKB19
    142745 g__Sporolactobacillus p__Firmicutes
    144145 g__ p__Proteobacteria
    151212 g__Anaeromusa p__Firmicutes
    1567 g__Haemophilus p__Proteobacteria
    163048 g__ p__Proteobacteria
    163697 g__ p__Proteobacteria
    165 g__Diplazium p__Proteobacteria
    18326 g__ p__Acidobacteria
    18415 g__Dehalobacterium p__Firmicutes
    185786 g__Candidatus_Hamiltonellap__Proteobacteria
    18684 g__ p__Tenericutes
    18769 g__ p__Spirochaetes
    19068 g__ p__Proteobacteria
    190784 g__ p__Proteobacteria
    190914 g__Aquicella p__Proteobacteria
    2 g__Bacillus p__Firmicutes
    207669 g__Vitreoscilla p__Proteobacteria
    21753 g__ p__Actinobacteria
    22019 g__Candidatus_Tremblaya p__Proteobacteria
    22200 g__Desulfosporosinus p__Firmicutes
    622786 g__ p__Actinobacteria
    627223 g__Inquilinus p__Proteobacteria
    627381 g__Candidatus_Koribacter p__Acidobacteria
    629097 g__Hyphomonas p__Proteobacteria
    629216 g__ p__Chloroflexi
    630410 g__ p__Planctomycetes
    630575 g__ p__Chloroflexi
    630637 g__Rhodospirillum p__Proteobacteria
    634196 g__ p__Chloroflexi
    635427 g__Sphingopyxis p__Proteobacteria
    638299 g__ p__Proteobacteria
    639307 g__Cloacibacillus p__Synergistetes
    641272 g__ p__Proteobacteria
    642523 g__Nitratireductor p__Proteobacteria
    645454 g__ p__Firmicutes
    658454 g__ p__Proteobacteria
    661532 g__Candidatus_Entotheonellap__Proteobacteria
    668751 g__PSB-M-3 p__Firmicutes
    6802 g__Erwinia p__Proteobacteria
    6905 g__Neisseria p__Proteobacteria
    8054 g__ p__Proteobacteria
    81484 g__Zobellella p__Proteobacteria
    8477 g__ p__Firmicutes
    85359 g__ p__Proteobacteria
    88189 g__Salinispora p__Proteobacteria
    88867 g__Planomicrobium p__Firmicutes
    89277 g__Methylocaldum p__Proteobacteria
    9438 g__ p__Proteobacteria
    98528 g__ p__Tenericutes
    98620 g__vadinHB04 p__Firmicutes
    df <- as.data.frame(read.table("nodes_id.txt", header=TRUE, row.names = 1))
    visNetwork(nodes = df, edges = data$edges)%>% visOptions(highlightNearest =  list(enabled = T, degree = 3, hover = T), 
        nodesIdSelection = TRUE)
    # net <- visNetwork(nodes = df, edges = data$edges)%>% visOptions(highlightNearest =  list(enabled = T, degree = 3, hover = T), 
    vn <- visNetwork(nodes = df, edges = data$edges)%>% visOptions(highlightNearest =  list(enabled = T, degree = 3, hover = T), 
        nodesIdSelection = TRUE)
    
    #     nodesIdSelection = TRUE)
    
    # visSave(net, file = "network.html")
    # visExport(net, type = "jpeg", name="network")
    
    visSave(vn, file = "networks_interactive.html")
    

    <!doctype html>

    x2 <- tax_glom(metro, taxrank="Genus") 
    metro_pas=subset_samples(x2, sample_type %in% "Pasamanos")
    
    net2<- make_network(metro_pas,type="taxa")
    
    
    
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Warning message in vegdist(structure(c(2, 52, 0, 6, 4, 696, 137, 2, 22, 0, 0, 0, :
    “you have empty rows: their dissimilarities may be meaningless in method “jaccard””Warning message in vegdist(structure(c(2, 52, 0, 6, 4, 696, 137, 2, 22, 0, 0, 0, :
    “missing values in results”
    
    plot_network(net2, metro_pas,"taxa", color="Phylum")
    
    Error in dimnames(x) <- dn: length of 'dimnames' [1] not equal to array extent
    Traceback:
    
    
    1. plot_network(net2, metro_pas, "taxa", color = "Phylum")
    
    2. data.frame(tax_table(physeq))
    
    3. as.data.frame(x[[i]], optional = TRUE, stringsAsFactors = stringsAsFactors)
    
    4. as.data.frame.matrix(x[[i]], optional = TRUE, stringsAsFactors = stringsAsFactors)
    
    5. as.factor(x[, i])
    
    6. factor(x)
    
    7. order(y)
    
    8. lapply(z, function(x) if (is.object(x)) as.vector(xtfrm(x)) else x)
    
    9. FUN(X[[i]], ...)
    
    10. as.vector(xtfrm(x))
    
    11. xtfrm(x)
    
    12. xtfrm.default(x)
    
    13. as.vector(rank(x, ties.method = "min", na.last = "keep"))
    
    14. rank(x, ties.method = "min", na.last = "keep")
    
    15. x[!nas]
    
    16. x[!nas]
    
    17. tax_table(as(x, "matrix")[i, j, drop = FALSE])
    
    18. tax_table(as(x, "matrix")[i, j, drop = FALSE])
    
    19. .local(object)
    
    20. `rownames<-`(`*tmp*`, value = c("sp1", "sp0"))
    
    21. `rownames<-`(`*tmp*`, value = c("sp1", "sp0"))
    
    metro
    x4 <- tax_glom(metro, taxrank="Phylum")
    x4
    
    phyloseq-class experiment-level object
    otu_table()   OTU Table:         [ 50174 taxa and 47 samples ]
    sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
    tax_table()   Taxonomy Table:    [ 50174 taxa by 7 taxonomic ranks ]
    phy_tree()    Phylogenetic Tree: [ 50174 tips and 50172 internal nodes ]
    
    
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
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    phyloseq-class experiment-level object
    otu_table()   OTU Table:         [ 36 taxa and 47 samples ]
    sample_data() Sample Data:       [ 47 samples by 28 sample variables ]
    tax_table()   Taxonomy Table:    [ 36 taxa by 7 taxonomic ranks ]
    phy_tree()    Phylogenetic Tree: [ 36 tips and 35 internal nodes ]
    
    library(RColorBrewer)
    # vec <- c(vec0) #solo core
    metrotodos <- c("Pasamanos","Torniquete")
    sample_data(x4)$todos = get_variable(x4, "sample_type") %in% metrotodos
    mergeph1 <- merge_samples(x4, "todos")
    mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
    phylum.sum = tapply(taxa_sums(mergeph1), tax_table(mergeph1)[, "Phylum"], sum, na.rm=TRUE)
    topphyla = names(sort(phylum.sum,TRUE))[1:20]
    mergeph1 = prune_taxa((tax_table(mergeph1)[,"Phylum"] %in% topphyla),mergeph1)                                   
    t1 <- as.data.frame(colSums(otu_table(mergeph1))) #para ordenar x abundancia
    names(t1)[1] <- "abundance"
    t1 <- t1[order(-t1$abundance),]
    
    p <- plot_bar(mergeph1, fill="Phylum")
    
    # library(tidyverse)
                                       
    pd <- p$data %>% 
        as_tibble %>%
        mutate(Phylum = as.character(Phylum)) %>%
        replace_na(list(Genus = "unknown"))
    genus_abun <- pd %>%
        group_by(Phylum) %>%
        summarize(Abundance = sum(Abundance)) %>%
        arrange(Abundance)
    phylum_levels <- genus_abun$Phylum
    pd0 <- pd %>%
        mutate(Phylum = factor(Phylum, phylum_levels))
    ggplot(pd0, aes(x = Sample, y = Abundance, fill= Phylum, color= Phylum)) + geom_bar(stat = "identity")  +
                                       scale_fill_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(20))+
                                       scale_color_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(20))
        
                                       
    # t2 <- t1[order(-t1$colSums(otu_table(mergeph1))),]                                
    #  head(t2)                                   
    
    # # t1 <- as.data.frame(colSums(otu_table(mergeph1)))
    
    # # write.table(t, "vennupset.txt") 
    # t <-(tax_table(mergeph1)) #hago esto porque el melt sobre este objeto phyloseq no trabaja, creo que hay que usar psmelt para esto
    
    # write.table(t, "taxvennupset.txt") 
    # t <- as.data.frame(read.table("taxvennupset.txt", header=T, row.names = 1))
    
    # # system("paste vennupset.txt taxvennupset.txt >coreupset.txt")
    
    # # read.table("coreupset.txt", header=T, sep="\t") 
    # t3 <- merge(t,t1, by=0, all=TRUE )
    
    # names(t3)[9] <-"abundance"
    
    # t4 <- t3[order(-t3$abundance),]
    # write.table(t4, "taxvennupset-lineas.txt")
    #  t5 <-   as.vector(t4$Row.names)
    # head(t5)
    # summary(t4)
                                       
                                       
    # physeqsubsetOTU <- subset_taxa(x4, rownames(tax_table(x3)) %in% vec)
    # mergeph1 <- merge_samples(physeqsubsetOTU, "sample_type")
    # mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
                                       
    # #       write.table(t(otu_table(mergeph1)),"heatmap_core-Metro-Entrada.csv",sep="\t")
    # #      write.table(tax_table(mergeph1),"heatmap_core-Metro-Entrada.tax.csv",sep="\t")
    # #     #Correción a valores vacios en Género 
        
    #     ylabvec = as(tax_table(mergeph1)[,"Genus"], "character")
    # names(ylabvec) <- taxa_names(mergeph1)
    # ylabvec[is.na(ylabvec)] <- ""
        
    #     #####
        
    
    #     t1 <- as.data.frame(colSums(otu_table(mergeph1))) #para ordenar x abundancia
                                       
    #  plot_heatmap(mergeph1, "bray", taxa.order=rev(t5)) + scale_y_discrete(labels=ylabvec)  + theme_minimal () +
    #    scale_fill_gradient(low="#F1E8FA", high="#FA7500", na.value = "white", trans = "log10")  +
    #    theme(axis.text.x = element_text( angle = 90, hjust = 1),
    #          axis.text.y = element_text(size = 2.5))
        
    #     ggsave ("heatmap_core-Metro-Entrada.pdf", width=10, height=110, units="cm")
    
    Found more than one class "phylo" in cache; using the first, from namespace 'phyloseq'
    Also defined by ‘RNeXML’
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    Also defined by ‘RNeXML’
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    Also defined by ‘RNeXML’
    

    png

    metrotodos <- c("Pasamanos","Torniquete")
    sample_data(x3)$todos = get_variable(x3, "sample_type") %in% metrotodos
    mergeph1 <- merge_samples(x3, "todos")
    mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
    phylum.sum = tapply(taxa_sums(mergeph1), tax_table(mergeph1)[, "Genus"], sum, na.rm=TRUE)
    topphyla = names(sort(phylum.sum,TRUE))[1:600]
    mergeph1 = prune_taxa((tax_table(mergeph1)[,"Genus"] %in% topphyla),mergeph1)                                   
    t1 <- as.data.frame(colSums(otu_table(mergeph1))) #para ordenar x abundancia
    names(t1)[1] <- "abundance"
    t1 <- t1[order(-t1$abundance),]
    
    p <- plot_bar(mergeph1, fill="Genus")
    
    library(tidyverse)
                                       
    pd <- p$data %>% 
        as_tibble %>%
        mutate(Genus = as.character(Genus)) # %>%
    #     replace_na(list(Genus = "unknown"))
    genus_abun <- pd %>%
        group_by(Genus) %>%
        summarize(Abundance = sum(Abundance)) %>%
        arrange(Abundance)
    genus_levels <- genus_abun$Genus
    pd0 <- pd %>%
        mutate(Genus = factor(Genus, genus_levels))
    p <- ggplot(pd0, aes(x = Sample, y = Abundance, fill= Genus, color= Genus)) + geom_bar(stat = "identity")  +
                                       scale_fill_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(600))+
                                       scale_color_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(600))
                                       
    
    
    p
    ggsave ("Genus_histogram_sort.pdf", width=180, height=25, units="cm", limitsize=FALSE)
    
    mergeph1 <- subset_taxa(x3, Genus!="g_")
    # mergeph1 <- prune_taxa(names(sort(taxa_sums(mergeph1),TRUE)[1:30]), mergeph1)
    
    
    # sample_data(x3)$todos = get_variable(x3, "sample_type") %in% metrotodos
    # mergeph1 <- merge_samples(x3, "todos")
    mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
    phylum.sum = tapply(taxa_sums(mergeph1), tax_table(mergeph1)[, "Genus"], sum, na.rm=TRUE)
    #topphyla = names(sort(phylum.sum,TRUE))[1:600]
    # #mergeph1 = prune_taxa((tax_table(mergeph1)[,"Genus"] %in% topphyla),mergeph1)                                   
    # t1 <- as.data.frame(colSums(otu_table(mergeph1))) #para ordenar x abundancia
    # names(t1)[1] <- "abundance"
    # t1 <- t1[order(-t1$abundance),]
    
    p <- plot_bar(mergeph1, fill="Genus")
    
               
    pd <- p$data %>% 
        as_tibble %>%
        mutate(Genus = as.character(Genus)) # %>%
    #     replace_na(list(Genus = "unknown"))
    genus_abun <- pd %>%
        group_by(Genus) %>%
        summarize(Abundance = sum(Abundance)) %>%
        arrange(Abundance)
    genus_levels <- genus_abun$Genus
    pd0 <- pd %>%
        mutate(Genus = factor(Genus, genus_levels))
        pd0$Genus <- as.character(pd0$Genus)                               
        pd0$Genus [pd0$Abundance < 0.1] <- "Others"
    p <- ggplot(pd0, aes(x = Sample, y = Abundance, fill= Genus, color= Genus)) + geom_bar(stat = "identity")  +
                                       scale_fill_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(31)) +
                                       scale_color_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(31))
                                       
    p
    
    Error in tax_table(physeq): object 'x3' not found
    Traceback:
    
    
    1. subset_taxa(x3, Genus != "g_")
    
    2. tax_table(physeq)
    
    
    x4 = transform_sample_counts(x3,function(x) x/sum(x))
    data <- psmelt(x4)                          
    data$Genus <- as.character(data$Genus)
    
    data$Genus[data$Abundance <= 0.03] <- "Others"
    z <- factor(unique(data$Genus))
    z <- nlevels(z)
                                 
    
    
    library(tidyverse)
                                       
    pd <- data %>% 
        as_tibble %>%
        mutate(Genus = as.character(Genus)) # %>%
    #     replace_na(list(Genus = "unknown"))
    genus_abun <- pd %>%
        group_by(Genus) %>%
        summarize(Abundance = sum(Abundance)) %>%
        arrange(Abundance)
    genus_levels <- genus_abun$Genus
    pd0 <- pd %>%
        mutate(Genus = factor(Genus, genus_levels))
                                 
    
    p <- ggplot(pd0, aes(x = Sample, y = Abundance, fill= Genus, color= Genus)) + geom_bar(stat = "identity", position="stack")  +
                                       scale_fill_manual(values=rev(colorRampPalette(brewer.pal(12,"Paired"))(z))) +
                                       scale_color_manual(values=rev(colorRampPalette(brewer.pal(12,"Paired"))(z)))
                                       
    p
    
    metrotodos <- c("Pasamanos","Torniquete")
    sample_data(x3)$todos = get_variable(x3, "sample_type") %in% metrotodos
    mergeph1 <- merge_samples(x3, "todos")
    
    x4 = transform_sample_counts(mergeph1,function(x) (x/sum(x))*100)
    data <- psmelt(x4)                          
    data$Genus <- as.character(data$Genus)
    
    data$Genus[data$Abundance <= 0.5] <- "Others < 0.5%"
    z <- factor(unique(data$Genus))
    z <- nlevels(z)
                                 
    
    
    library(tidyverse)
                                       
    pd <- data %>% 
        as_tibble %>%
        mutate(Genus = as.character(Genus)) # %>%
    #     replace_na(list(Genus = "unknown"))
    genus_abun <- pd %>%
        group_by(Genus) %>%
        summarize(Abundance = sum(Abundance)) %>%
        arrange(Abundance)
    genus_levels <- genus_abun$Genus
    pd0 <- pd %>%
        mutate(Genus = factor(Genus, genus_levels))
                                 
    p <- ggplot(pd0, aes(x = Sample, y = Abundance, fill= Genus, color= Genus)) + geom_bar(stat = "identity", position="stack")  +
                                       scale_fill_manual(values=rev(colorRampPalette(brewer.pal(10,"Paired"))(z))) +
                                       scale_color_manual(values=rev(colorRampPalette(brewer.pal(10,"Paired"))(z))) + theme_light()
                                       
    p
    
                                 
                                 
                                 ggsave("genus_allsamples_histogram.pdf")
    
    ── Attaching packages ─────────────────────────────────────── tidyverse 1.2.1 ──
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    ✔ tidyr   0.8.2       ✔ dplyr   0.8.0.1
    ✔ readr   1.3.1       ✔ stringr 1.4.0  
    ✔ tibble  2.1.3       ✔ forcats 0.4.0  
    ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
    ✖ dplyr::filter() masks stats::filter()
    ✖ dplyr::lag()    masks stats::lag()
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    png

    metrotodos <- c("Pasamanos","Torniquete")
    sample_data(x3)$todos = get_variable(x3, "sample_type") %in% metrotodos
    mergeph1 <- merge_samples(x3, "todos")
    
    mergeph1 = transform_sample_counts(mergeph1,function(x) x/sum(x))
    phylum.sum = tapply(taxa_sums(mergeph1), tax_table(mergeph1)[, "Genus"], sum, na.rm=TRUE)
    topphyla = names(sort(phylum.sum,TRUE))[1:600]
                                       
                                       
    # phylum.sum = tapply(taxa_sums(mergeph1), tax_table(mergeph1)[, "Genus"], sum, na.rm=TRUE)
    # topphyla = names(sort(phylum.sum,TRUE))[1:20]
    # mergeph1 = prune_taxa((tax_table(mergeph1)[,"Phylum"] %in% topphyla),mergeph1)                                   
    t1 <- as.data.frame(colSums(otu_table(mergeph1))) #para ordenar x abundancia
    names(t1)[1] <- "abundance"
    t1 <- t1[order(-t1$abundance),]
    
    p <- plot_bar(mergeph1, fill="Genus")
    
    library(tidyverse)
                                       
    pd <- p$data %>% 
        as_tibble %>%
        mutate(Genus = as.character(Genus)) %>%
        replace_na(list(Genus = "unknown"))
    genus_abun <- pd %>%
        group_by(Genus) %>%
        summarize(Abundance = sum(Abundance)) %>%
        arrange(Abundance)
    genus_levels <- genus_abun$Genus
    pd0 <- pd %>%
        mutate(Genus = factor(Genus, genus_levels))
                                       
                                     
    head(pd0)                                 
              
    pd0$Genus[pd0$Abundance < 0.01] <- "Others"                             
    head(pd0) 
    
    # ggplot(pd0, aes(x = id, y = Abundance, fill= Genus, color= Genus)) + geom_bar(stat = "identity")  +
    #                                    scale_fill_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(z))+
    #                                    scale_color_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(z))
    
    Error in sample_data(physeq, FALSE): object 'x3' not found
    Traceback:
    
    
    1. get_variable(x3, "sample_type") %in% metrotodos
    
    2. get_variable(x3, "sample_type")
    
    3. sample_data(physeq, FALSE)
    
    metrotodos <- c("Pasamanos","Torniquete")
    sample_data(x3)$todos = get_variable(x3, "sample_type") %in% metrotodos
    mergeph1 <- merge_samples(x3, "todos")
    topphyla = names(sort(phylum.sum,TRUE))[1:17]
    mergeph1 = prune_taxa((tax_table(mergeph1)[,"Genus"] %in% topphyla),mergeph1)                                   
    t1 <- as.data.frame(colSums(otu_table(mergeph1))) #para ordenar x abundancia
    names(t1)[1] <- "abundance"
    t1 <- t1[order(-t1$abundance),]
    
    
    # p$data$Genus [p$data$Abundance < 0.002] <- "Others"                             
    # z <- factor(unique(p$data$Genus))
    # z <- nlevels(z) + 1
    
    pd <- p$data %>% 
        as_tibble %>%
        mutate(Genus = as.character(Genus)) %>%
        replace_na(list(Genus = "unknown"))
    genus_abun <- pd %>%
        group_by(Genus) %>%
        summarize(Abundance = sum(Abundance)) %>%
        arrange(Abundance)
    genus_levels <- genus_abun$Genus
    pd0 <- pd %>%
        mutate(Genus = factor(Genus, genus_levels))
    
    pd0$Genus <- as.character(pd0$Genus)
    
    
    ggplot(pd0, aes(x = Sample, y = Abundance, fill= Genus, color= Genus)) + geom_bar(stat = "identity")  +
                                       scale_fill_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(z))+
                                       scale_color_manual(values=colorRampPalette(brewer.pal(8,"Paired"))(z))
    
    x4 <- tax_glom(metro, taxrank="Phylum")
    metrotodos <- c("Pasamanos","Torniquete")
    sample_data(x4)$todos = get_variable(x4, "sample_type") %in% metrotodos
    mergeph1 <- merge_samples(x4, "todos")
    
    x4 = transform_sample_counts(mergeph1,function(x) (x/sum(x))*100)
    data <- psmelt(x4)                          
    data$Phylum <- as.character(data$Phylum)
    
    data$Phylum[data$Abundance <= 0.05] <- "Others < 0.05%"
    z <- factor(unique(data$Phylum))
    z <- nlevels(z)
                                 
    
    
    library(tidyverse)
                                       
    pd <- data %>% 
        as_tibble %>%
        mutate(Phylum = as.character(Phylum)) # %>%
    #     replace_na(list(Phylum = "unknown"))
    Phylum_abun <- pd %>%
        group_by(Phylum) %>%
        summarize(Abundance = sum(Abundance)) %>%
        arrange(Abundance)
    Phylum_levels <- Phylum_abun$Phylum
    pd0 <- pd %>%
        mutate(Phylum = factor(Phylum, Phylum_levels))
                                 
    p <- ggplot(pd0, aes(x = Sample, y = Abundance, fill= Phylum, color= Phylum)) + geom_bar(stat = "identity", position="stack")  +
                                       scale_fill_manual(values=(colorRampPalette(brewer.pal(10,"Paired"))(z))) +
                                       scale_color_manual(values=(colorRampPalette(brewer.pal(10,"Paired"))(z))) + theme_light() +
                                       theme(axis.text.x=element_text(angle=90, hjust=1)) #+ theme(legend.position="bottom") +  guides(fill=guide_legend(nrow=2))
                                       
    p
     ggsave("phylum_allsamples_histogram.pdf")                            
    
    Saving 6.67 x 6.67 in image
    

    png